PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g23460
Common NameGSCOC_T00007333001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 283aa    MW: 31122.3 Da    PI: 7.5982
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g23460genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.33e-211764249
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 +i+n+   qvtfskRr+g++KKA+EL++L++ eva+++fs+  k+y +
  Cc00_g23460 17 KIQNEQHLQVTFSKRRAGLFKKASELCTLTGSEVALVVFSPGEKVYSF 64
                 699*******************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-30867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.717868IPR002100Transcription factor, MADS-box
CDDcd002651.13E-30977No hitNo description
SuperFamilySSF554559.03E-25980IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-171030IPR002100Transcription factor, MADS-box
PfamPF003191.4E-231764IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-173045IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-174566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MVPVKKTRGR QKIDIAKIQN EQHLQVTFSK RRAGLFKKAS ELCTLTGSEV ALVVFSPGEK  60
VYSFGSPNID AIIEKFEFST PKSDDASTLL LEAHHRFNVQ HLNKQLSILE NQLEAKKKIG  120
ETLNQLRQVG QIRHWWYAPI NDLNLEQLES LHSALCELQN TVRIELEKPI YENTNQVPDL  180
NGINPSGISP LGINTRENEG GAFDLIQSQP PRTKAFAPTA ASSLVNTGIS SNAWTRALTA  240
ENGPTASLSF APNASEFDGA TMPCYPSQGF NTIYGGLTLF KI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-17996290MEF2 CHIMERA
6bz1_B1e-17996290MEF2 CHIMERA
6bz1_C1e-17996290MEF2 CHIMERA
6bz1_D1e-17996290MEF2 CHIMERA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027064476.10.0agamous-like MADS-box protein AGL62
TrEMBLA0A068VK530.0A0A068VK53_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-45AGAMOUS-like 62