PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g20690
Common NameGSCOC_T00001286001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 305aa    MW: 33063.3 Da    PI: 4.9223
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g20690genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.6e-10153197554
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  h+++Er RR+ri +++  L+el+P++      K + a++L +  +Y+k L
  Cc00_g20690 153 HSIAERLRRERISERIKALQELVPSC-----NKTDRAAMLDEILDYVKFL 197
                  99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.42E-16146207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.45E-11146202No hitNo description
PROSITE profilePS5088816.323148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15150208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-7153197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MATNPPQEGY PTDDFLEQIL QLPSYSGLPV NDVGSTSDTA SLNSAVSQLS SVAGGLHHHQ  60
QLFPLGLSLD NGRDDVTDTG AFGVKADRGE AVNMGSLYPG FEQMQPHGMR HAAPQVQQAF  120
QGQPTPSTAV TVPHPPAIRP RVRARRGQAT DPHSIAERLR RERISERIKA LQELVPSCNK  180
TDRAAMLDEI LDYVKFLRLQ VKVLSMSRLG GAGAVAQLVA DIPLQTVEGD TGENITNQQV  240
WEKWSNEETE REVAKLMEED VGAAMQYLQS KSLCIMPISL AALIYPTLQS EEPALVKPEP  300
PAPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027116404.10.0transcription factor UNE12-like
RefseqXP_027165042.10.0transcription factor UNE12-like
SwissprotO227681e-82UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A068VJD00.0A0A068VJD0_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000348401e-152(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64211932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.25e-60bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]