PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g19380
Common NameGSCOC_T00007627001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NF-YA
Protein Properties Length: 323aa    MW: 35600.4 Da    PI: 7.1499
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g19380genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1041.4e-32166222158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  d p+YVNaKQy++Il+RRq Rakle+++k+  k+rkpylheSRh+hA++R RgsgGrF
  Cc00_g19380 166 DGPIYVNAKQYHGILRRRQVRAKLEAQNKM-VKGRKPYLHESRHQHAMNRVRGSGGRF 222
                  57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.9E-36164225IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.172165225IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.8E-28168222IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.3E-24168190IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860170190IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.3E-24199222IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MPHFASSPWW NLQEQQLSQT SSKNLSLRVE TPSLCFEEAK HLGQQIEEDQ SSHSMESSSQ  60
SQRGATTMGK SNSQDQCISS ESVQNESFGK HVEEQPKPAF FPSNLESSAN PSQIEFLRSA  120
AQIPCIYSDP YFSSLYSAYG PQAMIQPQMM GIAPARVPLP PDLAQDGPIY VNAKQYHGIL  180
RRRQVRAKLE AQNKMVKGRK PYLHESRHQH AMNRVRGSGG RFLSTKKQQQ QSESTLSTGS  240
FSASIHSCQE TDALEMEAER SNDSRHYAST STSSSAMGYT PDDIIFQQHA DSYISLSGQI  300
AGSTSSGGFM QNGTPLHVPT TR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-22168228464NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027065445.10.0nuclear transcription factor Y subunit A-3-like isoform X3
TrEMBLA0A068VIL00.0A0A068VIL0_COFCA; Uncharacterized protein
STRINGEOY303242e-88(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50092338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.15e-38nuclear factor Y, subunit A3