PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc00_g16650 | ||||||||
Common Name | GSCOC_T00009359001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | bHLH | ||||||||
Protein Properties | Length: 236aa MW: 26703.2 Da PI: 4.9489 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.2 | 9.5e-11 | 48 | 92 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + e Er+RR+++ + ++ Lr ++P+ + K++Ka+i + A+ YI++L Cc00_g16650 48 NIESERKRRQKLTETLHALRAVVPNiS------KMDKASIIKDAIGYIQEL 92 5689*********************66......****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.447 | 43 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-16 | 43 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.95E-10 | 46 | 97 | No hit | No description |
Pfam | PF00010 | 1.7E-8 | 48 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.9E-15 | 49 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-12 | 49 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MDDVDVYKDY WENMILQTEQ LGRNFDESFS FYDSSSPDGA QSSAASKNIE SERKRRQKLT 60 ETLHALRAVV PNISKMDKAS IIKDAIGYIQ ELHNQERMIQ AEISELESRR SIFLDFDQEI 120 SYNSKPKRSR FEQTCDSAGS RSSPIEVLEL RVSHMGEKTI VVSLTCSKRT DTMVKICEVF 180 ESLNLKIITA NITAFSGRLL KTVFLEANEE EKDVVKIKIQ TAIAALNDPD SPMSM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-13 | 48 | 92 | 9 | 53 | Transcription factor MYC2 |
5gnj_B | 1e-13 | 48 | 92 | 9 | 53 | Transcription factor MYC2 |
5gnj_E | 1e-13 | 48 | 92 | 9 | 53 | Transcription factor MYC2 |
5gnj_F | 1e-13 | 48 | 92 | 9 | 53 | Transcription factor MYC2 |
5gnj_G | 1e-13 | 48 | 92 | 9 | 53 | Transcription factor MYC2 |
5gnj_I | 1e-13 | 48 | 92 | 9 | 53 | Transcription factor MYC2 |
5gnj_M | 1e-13 | 48 | 92 | 9 | 53 | Transcription factor MYC2 |
5gnj_N | 1e-13 | 48 | 92 | 9 | 53 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 51 | 56 | ERKRRQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027065577.1 | 1e-163 | transcription factor bHLH35-like isoform X1 | ||||
Swissprot | Q2HIV9 | 6e-79 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A068VKQ5 | 1e-173 | A0A068VKQ5_COFCA; Uncharacterized protein | ||||
STRING | VIT_11s0052g00100.t01 | 1e-114 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2923 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 4e-74 | bHLH family protein |