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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc00_g15720 | ||||||||
Common Name | GSCOC_T00006890001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | LBD | ||||||||
Protein Properties | Length: 65aa MW: 7055.3 Da PI: 9.5874 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 48.3 | 3e-15 | 4 | 63 | 1 | 55 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeere 55 +C++C+vlr++C+++C + p++ p++q++++ +++k++G++ +++l++a pe+ r+ Cc00_g15720 4 SCNGCRVLRKGCSENCSIKPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRP 63 6*****************************************************999885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 11.506 | 3 | 64 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-11 | 4 | 62 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 65 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSENCS IKPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH 60 LRPG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB623910 | 2e-53 | AB623910.1 Camellia sinensis DNA, SSR marker, MSE0196. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027073729.1 | 4e-40 | LOB domain-containing protein 41-like | ||||
Refseq | XP_027077434.1 | 4e-40 | LOB domain-containing protein 41-like | ||||
Refseq | XP_027077531.1 | 4e-40 | LOB domain-containing protein 41-like | ||||
Refseq | XP_027179837.1 | 4e-40 | LOB domain-containing protein 41 | ||||
Swissprot | Q9M886 | 4e-39 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A068VH51 | 4e-40 | A0A068VH51_COFCA; Uncharacterized protein | ||||
STRING | POPTR_0004s09920.1 | 5e-39 | (Populus trichocarpa) | ||||
STRING | cassava4.1_012667m | 9e-39 | (Manihot esculenta) | ||||
STRING | cassava4.1_012877m | 7e-39 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21959 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 2e-41 | LOB domain-containing protein 41 |