PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g12990
Common NameGSCOC_T00006487001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 338aa    MW: 37522.5 Da    PI: 6.6588
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g12990genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.53.1e-10173197126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  y +++C++f++ GtC++Gd C +aHg
  Cc00_g12990 173 YSYVPCPDFHK-GTCQRGDACEYAHG 197
                  7799*******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.2E-633117IPR020683Ankyrin repeat-containing domain
PROSITE profilePS502979.3573394IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.64E-835120IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.1646894IPR002110Ankyrin repeat
PfamPF000230.0147093IPR002110Ankyrin repeat
CDDcd002049.16E-770117No hitNo description
SMARTSM003565.9E-5172198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.258173199IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-8173197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5175199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4205235IPR000571Zinc finger, CCCH-type
SMARTSM0035625207230IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.174207231IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MCNGSKRKDC AVDLAMGDFV SSSSELLEFS ASDDLSAFMV AVEREGHGID ELAVWYGRRI  60
GSKEMGLEER TPLMIASMFG SKRVVNYILE KGSDGATALH CTVAGGFAAS LEIVRLLPSL  120
PDIKNGIYGT DEFRMYTFKI KPCSRAYLHD WTECPFVHPD ENARRRDPRK YHYSYVPCPD  180
FHKGTCQRGD ACEYAHGIFE CWLHPAQYRT RLCKDETNCT RRVCFFAHKP EELRPLYAST  240
GSAVPSPRSF SSTSSPIGGS MWPNQPTLAP PNLQLPGSRL KATINARDID LDAELLGLDG  300
NRQWRQQLLD DLSSLSILSY SDPQSPSPSP PHPPPPL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027124200.10.0zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ41e-99C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A068VGJ10.0A0A068VGJ1_COFCA; Uncharacterized protein
STRINGAES711701e-112(Medicago truncatula)
STRINGMigut.F00690.1.p1e-112(Erythranthe guttata)
STRINGXP_010264619.11e-112(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-90C3H family protein