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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc00_g12270 | ||||||||
Common Name | GSCOC_T00008605001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | bHLH | ||||||||
Protein Properties | Length: 629aa MW: 68313.5 Da PI: 5.5246 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.6 | 1.7e-11 | 440 | 482 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L Cc00_g12270 440 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 482 79*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.58 | 433 | 482 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.18E-16 | 436 | 502 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.4E-14 | 439 | 488 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.9E-9 | 439 | 482 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-16 | 440 | 496 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.83E-13 | 440 | 486 | No hit | No description |
CDD | cd04873 | 6.32E-7 | 557 | 617 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010440 | Biological Process | stomatal lineage progression | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0050826 | Biological Process | response to freezing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 629 aa Download sequence Send to blast |
MMDQQFSCMN VTSQATSVSL LQIKDVSLWK KPFPFFLSFI CQGKKKKLER NMLSRVNSMV 60 WMDDKDQETA SWDHHPSTMN NNSNNEQNGV LENREDMEMG SIPTFKSMLG VEDEDWYLTT 120 TNHAETNNPN NNNAGTMQSS HLDMRDITFS ANFAEADHQN LILQAVDSSA SCSPSPASVF 180 NNLDPSQVHH YFLQPPPRSN LLSGLNTLST TQLDNGSFDL GCESGFLESH QGLGGFSTRG 240 GVGVLGVGFN DLSSQTQLGS PNLNSGSQFS TANLLQMPQN NGGFGPLGFG ECSGNVNSLF 300 LNRSKLLQPL DNFTSTGAQP TLFQKRAALR KNLACSSSNL GVLGGEIGQS SGNSESYDKK 360 KEVGEASGLK RKGSDFDDLE DVSIDGSNLN YDSDDLLENH SKVVGEGVKN GGNSSNANST 420 VTGGEDQKGK KKGLPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIEYLK 480 ELLQKINDLQ NELESTPAAS ALTPTTPFYP LTPTASALPC RIKEELCPSA FASPLSSPTG 540 QPARIEVRLR EGRAVNIHMF CGRRPGLLLS TMRALDSLGL DIQQAVISCF NGFALDIFRA 600 EQCNEGQDIP PEHIKAVLLD SAGFQGIV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 6e-14 | 435 | 492 | 6 | 63 | Transcription factor MYC2 |
5gnj_B | 6e-14 | 435 | 492 | 6 | 63 | Transcription factor MYC2 |
5gnj_E | 6e-14 | 435 | 492 | 6 | 63 | Transcription factor MYC2 |
5gnj_F | 6e-14 | 435 | 492 | 6 | 63 | Transcription factor MYC2 |
5gnj_G | 6e-14 | 435 | 492 | 6 | 63 | Transcription factor MYC2 |
5gnj_I | 6e-14 | 435 | 492 | 6 | 63 | Transcription factor MYC2 |
5gnj_M | 6e-14 | 435 | 492 | 6 | 63 | Transcription factor MYC2 |
5gnj_N | 6e-14 | 435 | 492 | 6 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 429 | 447 | KKKGLPAKNLMAERRRRKK |
2 | 441 | 448 | ERRRRKKL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027122788.1 | 0.0 | transcription factor ICE1-like | ||||
Refseq | XP_027122789.1 | 0.0 | transcription factor ICE1-like | ||||
TrEMBL | A0A068VGT4 | 0.0 | A0A068VGT4_COFCA; Uncharacterized protein | ||||
STRING | XP_009769541.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2703 | 24 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26744.4 | 1e-115 | bHLH family protein |