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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc00_g09050 | ||||||||
Common Name | GSCOC_T00012318001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 511aa MW: 55283.4 Da PI: 7.9668 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.7 | 1.5e-11 | 137 | 161 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCkyGd+CkF H+ Cc00_g09050 137 GEKDCAYYMLTRTCKYGDSCKFDHP 161 7889********************8 PP | |||||||
2 | zf-CCCH | 37 | 5.6e-12 | 188 | 213 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+ff++t Ck+G rCkF+H+ Cc00_g09050 188 PGEPDCPFFMKTQRCKFGTRCKFNHP 213 5789*********************8 PP | |||||||
3 | zf-CCCH | 39.4 | 9.7e-13 | 236 | 260 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG+Ck+G++CkF+H++ Cc00_g09050 236 EPPCAFYMKTGQCKFGATCKFHHPK 260 79*********************96 PP | |||||||
4 | zf-CCCH | 34.2 | 4.2e-11 | 312 | 335 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG +C+++H+ Cc00_g09050 312 EVDCPFYLKTGSCKYGQTCRYNHP 335 689********************9 PP | |||||||
5 | zf-CCCH | 38.4 | 2.1e-12 | 394 | 419 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG+Ck+G rCkF+H+ Cc00_g09050 394 PGEAACDFYMKTGECKFGQRCKFHHP 419 57899********************8 PP | |||||||
6 | zf-CCCH | 36.6 | 7.5e-12 | 453 | 474 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tGtCkyG++C+F H+p Cc00_g09050 453 CPYYMKTGTCKYGATCRFDHPP 474 ********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.516 | 135 | 163 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-4 | 135 | 162 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 136 | 162 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-9 | 137 | 161 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 141 | 160 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.094 | 187 | 215 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.1E-6 | 187 | 214 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-9 | 189 | 213 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.67E-6 | 192 | 217 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.9E-5 | 193 | 214 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-6 | 233 | 260 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.948 | 233 | 261 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-6 | 235 | 261 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-10 | 236 | 260 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.5E-6 | 238 | 261 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.605 | 309 | 337 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-5 | 309 | 336 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.0E-9 | 312 | 335 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 313 | 336 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-4 | 315 | 334 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.5E-6 | 393 | 420 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.737 | 393 | 421 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.23E-6 | 394 | 422 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.8E-10 | 395 | 419 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-5 | 399 | 419 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.629 | 447 | 475 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.0E-6 | 447 | 474 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.94E-6 | 451 | 474 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-5 | 453 | 472 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.7E-9 | 453 | 474 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MVADSFLSSS DASSLLGSSR YLTSSDPLFS SSAARLFSHS DSYSFRIPGL DAVSPTTTSK 60 PASSSSSWPG PPGVDVADPF LLATLKRSSS QALYHQTVFG AHNPIGQTEA WFSTNPLAKR 120 PRFESAGNLP IYPQRPGEKD CAYYMLTRTC KYGDSCKFDH PIWVPEGGIP DWKEVPLVDT 180 SEPLPERPGE PDCPFFMKTQ RCKFGTRCKF NHPIEKITPL VALETNSAVL PERPSEPPCA 240 FYMKTGQCKF GATCKFHHPK DLQISTAGQE NSFGEQSKLS TNETSGDFKA VKPPVTPAMM 300 HNTKGLPIRL GEVDCPFYLK TGSCKYGQTC RYNHPDRNAI NPPAAAIGAA YIASPAPNLS 360 IGIVNPAASI LQTFDPRLTQ TTVGLAAAIY PQRPGEAACD FYMKTGECKF GQRCKFHHPI 420 DRSAPIISGK ETQQENVKLT RAGLPRREGA IHCPYYMKTG TCKYGATCRF DHPPPGEVLA 480 MGTTAQGTWS PTGGEAEEGS SGPETGGEKQ * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027064369.1 | 0.0 | zinc finger CCCH domain-containing protein 37-like isoform X2 | ||||
Swissprot | Q941Q3 | 0.0 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A068VET8 | 0.0 | A0A068VET8_COFCA; Uncharacterized protein | ||||
STRING | XP_009782011.1 | 0.0 | (Nicotiana sylvestris) | ||||
STRING | XP_010260864.1 | 0.0 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10640 | 21 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-180 | floral homeotic protein (HUA1) |