PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc00_g08160

Common Name

GSCOC_T00000290001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

NF-YC

Protein Properties

Length: 278aa MW: 30652.8 Da PI: 4.9553

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc00_g08160	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58.4	1.5e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ ++ +v++ ++fdfl ++v + Cc00_g08160 6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLQRGAKTVSSLHLKHCVQSYNVFDFLREVVSK 86 5789************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.5E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	2.1E-20	4	89	IPR009072	Histone-fold
Pfam	PF00808	1.5E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDITLQRGAK 60 TVSSLHLKHC VQSYNVFDFL REVVSKVPDY GHSDAASADM SKRRKILPEE YNDSDEEFRK 120 NRMEVCHSSS SGRGRGRGRG RGRGRSSRIT DREAIRHENE SESSMSIQQS SKQISSPGST 180 ADTLAELESS KENIKSSDND NVLQNIDLNS GVGEGGDKTA ATLTEPSTSS AGPADTKGEE 240 YPGWALSEMD RMAIDPSQIA HLSSRLDEEE EDYDEEG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-22	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	143	RGRGRGRGRG
2	134	144	RGRGRGRGRGR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027114213.1	0.0	dr1-associated corepressor-like
Refseq	XP_027160655.1	0.0	dr1-associated corepressor-like
TrEMBL	A0A068VF77	0.0	A0A068VF77_COFCA; Uncharacterized protein
STRING	Migut.N01867.1.p	4e-97	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7960	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-67	nuclear factor Y, subunit C11