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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc00_g08030 | ||||||||
Common Name | GSCOC_T00006062001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | NAC | ||||||||
Protein Properties | Length: 398aa MW: 44675.8 Da PI: 6.4403 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 181.5 | 2.1e-56 | 3 | 130 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdee++++yL+kkv +k++ + +i+evd++k+ePwdLpkk+k +eke +fF++rd+ky+tg r+nrat sgyWkatgkdke+++ kg Cc00_g08030 3 LPPGFRFHPTDEEIITHYLTKKVVDKNFGA-IAIAEVDMNKCEPWDLPKKAKMGEKEHFFFCQRDRKYPTGMRTNRATGSGYWKATGKDKEIYKGKGC 99 79*************************999.88***************99999*****************************************9*** PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfy+grapkgekt+Wvmheyrle Cc00_g08030 100 LVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 130 *****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-62 | 2 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.108 | 3 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.5E-29 | 4 | 129 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MDLPPGFRFH PTDEEIITHY LTKKVVDKNF GAIAIAEVDM NKCEPWDLPK KAKMGEKEHF 60 FFCQRDRKYP TGMRTNRATG SGYWKATGKD KEIYKGKGCL VGMKKTLVFY RGRAPKGEKT 120 NWVMHEYRLE GRFSYYNFPK GAKDEWVVCR VFHKNVGIRR SPLRDLTRAD SFLDHLLDSP 180 SSLPPLMDIP NSSNRPGISS FSHEEDQEFK GATTSSGKSS DHGTLPSYFS TNLNNSTLQM 240 QQDLNTFLMP SYNYAFKTSY EAGSSNHDPS SFFRPPISVP DANFHGYQNE SYSSFSGFEA 300 TPDHQANSTT LSAPNQQGIS DPGKQCKMEQ FSSTNSMVSP SQDTGISNDM APEISSVVSK 360 INVESDKCMK DLEGISVDPN MSDLDSLWNI TDFTTEE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-52 | 1 | 155 | 18 | 169 | NAC domain-containing protein 19 |
3swm_B | 2e-52 | 1 | 155 | 18 | 169 | NAC domain-containing protein 19 |
3swm_C | 2e-52 | 1 | 155 | 18 | 169 | NAC domain-containing protein 19 |
3swm_D | 2e-52 | 1 | 155 | 18 | 169 | NAC domain-containing protein 19 |
3swp_A | 2e-52 | 1 | 155 | 18 | 169 | NAC domain-containing protein 19 |
3swp_B | 2e-52 | 1 | 155 | 18 | 169 | NAC domain-containing protein 19 |
3swp_C | 2e-52 | 1 | 155 | 18 | 169 | NAC domain-containing protein 19 |
3swp_D | 2e-52 | 1 | 155 | 18 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00518 | DAP | Transfer from AT5G18270 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027066455.1 | 0.0 | NAC domain-containing protein 46-like | ||||
TrEMBL | A0A068VES1 | 0.0 | A0A068VES1_COFCA; Uncharacterized protein | ||||
STRING | VIT_08s0007g07640.t01 | 1e-145 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.1 | 1e-102 | Arabidopsis NAC domain containing protein 87 |