PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc00_g07200 | ||||||||
Common Name | GSCOC_T00006852001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | bHLH | ||||||||
Protein Properties | Length: 237aa MW: 26733.2 Da PI: 5.4591 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.3 | 9e-11 | 49 | 93 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + e Er+RR+++ ++++ r ++P+ + K++Ka+i + A++YI++L Cc00_g07200 49 NIESERKRRKKLTERLHAVRAVVPNiS------KMDKASIIKDAIDYIQEL 93 5689*********************66......****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.07E-16 | 44 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.663 | 44 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.47E-10 | 47 | 98 | No hit | No description |
Pfam | PF00010 | 2.5E-8 | 49 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-14 | 50 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-12 | 50 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MADIDVAYKY YWENMFLQTE QLASYFDESF SFHDSNSPDG AQSSAASKNI ESERKRRKKL 60 TERLHAVRAV VPNISKMDKA SIIKDAIDYI QELHNQERVI QAEISELESK RSIFLDFDEE 120 RSCNSKSKRS RFEQTCDSVG SRSSPIEVLE LRVSHIGQKT IVVSLACSKR TDTIVKICEV 180 FESLNLKIIT ANITAFSGRL LNTVFLEANE EEKDVLKIKI QTAIAALNDP DSPTSV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 4e-14 | 49 | 113 | 9 | 71 | Transcription factor MYC2 |
5gnj_B | 4e-14 | 49 | 113 | 9 | 71 | Transcription factor MYC2 |
5gnj_E | 4e-14 | 49 | 113 | 9 | 71 | Transcription factor MYC2 |
5gnj_F | 4e-14 | 49 | 113 | 9 | 71 | Transcription factor MYC2 |
5gnj_G | 4e-14 | 49 | 113 | 9 | 71 | Transcription factor MYC2 |
5gnj_I | 4e-14 | 49 | 113 | 9 | 71 | Transcription factor MYC2 |
5gnj_M | 4e-14 | 49 | 113 | 9 | 71 | Transcription factor MYC2 |
5gnj_N | 4e-14 | 49 | 113 | 9 | 71 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 52 | 59 | ERKRRKKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027069104.1 | 1e-166 | transcription factor bHLH35-like isoform X2 | ||||
Swissprot | Q2HIV9 | 3e-77 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A068VEJ6 | 1e-172 | A0A068VEJ6_COFCA; Uncharacterized protein | ||||
STRING | XP_008223870.1 | 1e-110 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2923 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 2e-74 | bHLH family protein |