PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc00_g06580

Common Name

GSCOC_T00005835001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

TCP

Protein Properties

Length: 409aa MW: 42329.6 Da PI: 8.0279

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc00_g06580	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.7	6e-40	94	205	3	115
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaakskk 99 ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLl qa+pai+++tgt++++a+++ ++s +ss+ ++++ +++a+ Cc00_g06580 94 VAKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLHQAEPAIIAATGTGTIPANFSsLNVSLRSSGT--TISAPPSKSAPLFL 189 6899****************************************************************99976777777766..44444444445555 PP TCP 100 sqksaasalnlakesr 115 sa+++l ++++ Cc00_g06580 190 HGGSATAMLGFHHQLG 205 5555555565555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.954	99	153	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.4E-38	99	233	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MEFMEPHSKN QANTSNTSAS DHHHAPQQQE PGGPGSGQAA PVGGHGPFMG SISMHSRNLL 60 SSSSTPSSTT TTPTTTTAPS TASNNNNNSS GNKVAKKPSK DRHTKVDGRG RRIRMPALCA 120 ARVFQLTREL GHKSDGETIE WLLHQAEPAI IAATGTGTIP ANFSSLNVSL RSSGTTISAP 180 PSKSAPLFLH GGSATAMLGF HHQLGNTGFA QDPDENYMKK RFREDTTGAT SPSAAKPERA 240 GVQDHEPGSE AKTGLAQHSG FIPAQAMWAV APAAAASVGS TFWMLPAGTT MSAAAGSGGG 300 GGGSQQDHQL WQYKAAPTAM QRIGGYDFSG GGRFTPVQLG SMVLQQSQPV QQLGLGVSET 360 NMGMLASLNA YSGGGGSRVD LGMNLEQHHH QSQPQGSDSG DENPKDSQ*

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MEFMEPHSKN QANTSNTSAS DHHHAPQQQE PGGPGSGQAA PVGGHGPFMG SISMHSRNLL  60
SSSSTPSSTT TTPTTTTAPS TASNNNNNSS GNKVAKKPSK DRHTKVDGRG RRIRMPALCA  120
ARVFQLTREL GHKSDGETIE WLLHQAEPAI IAATGTGTIP ANFSSLNVSL RSSGTTISAP  180
PSKSAPLFLH GGSATAMLGF HHQLGNTGFA QDPDENYMKK RFREDTTGAT SPSAAKPERA  240
GVQDHEPGSE AKTGLAQHSG FIPAQAMWAV APAAAASVGS TFWMLPAGTT MSAAAGSGGG  300
GGGSQQDHQL WQYKAAPTAM QRIGGYDFSG GGRFTPVQLG SMVLQQSQPV QQLGLGVSET  360
NMGMLASLNA YSGGGGSRVD LGMNLEQHHH QSQPQGSDSG DENPKDSQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027094718.1	0.0	transcription factor TCP23-like
TrEMBL	A0A068VGS0	0.0	A0A068VGS0_COFCA; Uncharacterized protein
STRING	XP_009775051.1	1e-170	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	7e-65	TCP family protein