PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g06080
Common NameGSCOC_T00010709001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 195aa    MW: 22717.4 Da    PI: 10.9319
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g06080genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.0003592115123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  y C+ Cg+ ++++ +Lk+H r  H
  Cc00_g06080  92 YICSVCGRKCKTHLDLKKHFRQlH 115
                  89*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.72E-585120No hitNo description
PROSITE profilePS5015711.09492120IPR007087Zinc finger, C2H2
SMARTSM003550.006792115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094115IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MVRTKEGIYT AKPKKVVILW DLDNKPPRGP PYQAAMALKK VAQHFGNLVD ISAYANRHAF  60
IHLPQWVVEE RRERRRMDIL ERKGVSTPSE PYICSVCGRK CKTHLDLKKH FRQLHERERQ  120
KKLNRMRSLK GKKRQRFKER FIDGNEKYNE AARTLTSPKV GYGLASELRR AGVFVKTVED  180
KPQENFTNIP KPHS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027077019.11e-144uncharacterized protein LOC113700772, partial
RefseqXP_027178002.11e-144uncharacterized protein LOC113777161, partial
TrEMBLA0A068VE161e-143A0A068VE16_COFCA; Uncharacterized protein
STRINGXP_008452587.11e-114(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122681518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-103C2H2-like zinc finger protein