PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g03230
Common NameGSCOC_T00011586001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 318aa    MW: 36431.9 Da    PI: 6.1851
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g03230genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.21.1e-1630116698
                  ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ++  v  +g+l lpk+f++e+g +      ++l+ +sg  ++v +  +k  ++ +l++GW++F++ + L  g f+ Fk++g+sef   v +f+
  Cc00_g03230  30 ITQPVVDEGQLGLPKNFVKEYGDE--ICSSVRLNVPSGGIFRVGI--EKDENMLWLRDGWQRFAEHHSLTFGYFLWFKYKGNSEF--DVAIFD 116
                  5677888999***********865..4449***************..**********************************9999..888876 PP
2B355.31.2e-17217308497
                  E-..-HHHHTT-E.E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   4 vltpsdvlksgrl.vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   ++++++l ++ +  +p +f +++       +k + l+d++g++W+v +i  ++++ + l+kGW  F+++++L++gD++vF++++++    +v++f
  Cc00_g03230 217 LTMKEYNLGRCYIvHVPAEFSSTYlR-T--DKKSVELQDSDGNKWTVGVI-VRYGRVISLSKGWCYFCRDHKLCSGDVCVFEVIKSRPVVIKVTIF 308
                  5567777777655379****999953.3..3356***************5.6666789************************99876666666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.79E-1821117IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-1722117IPR015300DNA-binding pseudobarrel domain
CDDcd100171.29E-1225116No hitNo description
PROSITE profilePS5086311.57525118IPR003340B3 DNA binding domain
SMARTSM010191.0E-1126118IPR003340B3 DNA binding domain
PfamPF023628.5E-1430115IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-22208309IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-22208309IPR015300DNA-binding pseudobarrel domain
CDDcd100172.54E-16213309No hitNo description
SMARTSM010191.0E-11214311IPR003340B3 DNA binding domain
PROSITE profilePS5086312.915215311IPR003340B3 DNA binding domain
PfamPF023623.3E-14218308IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEDSDNQEGS TMENNRDWRG SDASSFYRII TQPVVDEGQL GLPKNFVKEY GDEICSSVRL  60
NVPSGGIFRV GIEKDENMLW LRDGWQRFAE HHSLTFGYFL WFKYKGNSEF DVAIFDLTAT  120
EIDYQCCSNN SKKFNPVAET TVPEPEHDAF CSAKTDDRHP IEISSSSETE EVEIRDVTTD  180
SGNPRSIRRR SRRRGKKISE HDVVTRLFKS DNPYFSLTMK EYNLGRCYIV HVPAEFSSTY  240
LRTDKKSVEL QDSDGNKWTV GVIVRYGRVI SLSKGWCYFC RDHKLCSGDV CVFEVIKSRP  300
VVIKVTIFPA RESVEVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1320431438146B3 domain-containing transcription factor VRN1
4i1k_B3e-1320431438146B3 domain-containing transcription factor VRN1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188196RRSRRRGKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027086802.10.0B3 domain-containing transcription factor VRN1-like
RefseqXP_027086803.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A068VB270.0A0A068VB27_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85571529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-25B3 family protein