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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc00_g02800 | ||||||||
Common Name | GSCOC_T00009759001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 243aa MW: 28152.9 Da PI: 9.4046 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.3 | 1.3e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+ey++ Cc00_g02800 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYAT 59 79***********************************************86 PP | |||||||
2 | K-box | 108.8 | 6e-36 | 80 | 174 | 6 | 100 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +e + + ++ e+akLk++ie Lqr+qRh +GedL++Lsl+eLq+Le+qL+++lk+iRs+Kn+l++e+i elqkk k+lqe+n+ L kk++e Cc00_g02800 80 LGGAEIESQGCWSLEHAKLKARIEVLQRNQRHCMGEDLDNLSLRELQNLEHQLDTALKHIRSRKNQLMFESIAELQKKDKALQEQNNVLAKKVKE 174 55556677789*********************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.562 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.5E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-33 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.61E-40 | 2 | 79 | No hit | No description |
PRINTS | PR00404 | 1.4E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.0E-29 | 87 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 17.003 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFEYATD 60 SCMERILERY ERYAYAERQL GGAEIESQGC WSLEHAKLKA RIEVLQRNQR HCMGEDLDNL 120 SLRELQNLEH QLDTALKHIR SRKNQLMFES IAELQKKDKA LQEQNNVLAK KVKEKEKEQA 180 QQPQWEQQNR HDLNSSSLVR SQPIHSLSIS ETYHRGGDNE AEGTQSSQTN AVMHPWMLRQ 240 MN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-22 | 1 | 73 | 1 | 72 | MEF2C |
5f28_B | 3e-22 | 1 | 73 | 1 | 72 | MEF2C |
5f28_C | 3e-22 | 1 | 73 | 1 | 72 | MEF2C |
5f28_D | 3e-22 | 1 | 73 | 1 | 72 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ483239 | 0.0 | KJ483239.1 Coffea arabica FUL (FUL) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027077909.1 | 1e-180 | truncated transcription factor CAULIFLOWER A-like | ||||
Refseq | XP_027077910.1 | 1e-180 | truncated transcription factor CAULIFLOWER A-like | ||||
Swissprot | Q42429 | 1e-120 | AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog | ||||
TrEMBL | A0A068VDS1 | 1e-178 | A0A068VDS1_COFCA; Uncharacterized protein | ||||
STRING | XP_009625854.1 | 1e-132 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA499 | 23 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 2e-97 | AGAMOUS-like 8 |
Publications ? help Back to Top | |||
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