PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g02800
Common NameGSCOC_T00009759001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 28152.9 Da    PI: 9.4046
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g02800genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.31.3e-30959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+ey++
  Cc00_g02800  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYAT 59
                 79***********************************************86 PP
2K-box108.86e-36801746100
        K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     +e + +  ++ e+akLk++ie Lqr+qRh +GedL++Lsl+eLq+Le+qL+++lk+iRs+Kn+l++e+i elqkk k+lqe+n+ L kk++e
  Cc00_g02800  80 LGGAEIESQGCWSLEHAKLKARIEVLQRNQRHCMGEDLDNLSLRELQNLEHQLDTALKHIRSRKNQLMFESIAELQKKDKALQEQNNVLAKKVKE 174
                  55556677789*********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.562161IPR002100Transcription factor, MADS-box
SMARTSM004325.5E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-33290IPR002100Transcription factor, MADS-box
CDDcd002651.61E-40279No hitNo description
PRINTSPR004041.4E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-313859IPR002100Transcription factor, MADS-box
PfamPF014865.0E-2987172IPR002487Transcription factor, K-box
PROSITE profilePS5129717.00388178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFEYATD  60
SCMERILERY ERYAYAERQL GGAEIESQGC WSLEHAKLKA RIEVLQRNQR HCMGEDLDNL  120
SLRELQNLEH QLDTALKHIR SRKNQLMFES IAELQKKDKA LQEQNNVLAK KVKEKEKEQA  180
QQPQWEQQNR HDLNSSSLVR SQPIHSLSIS ETYHRGGDNE AEGTQSSQTN AVMHPWMLRQ  240
MN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-22173172MEF2C
5f28_B3e-22173172MEF2C
5f28_C3e-22173172MEF2C
5f28_D3e-22173172MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4832390.0KJ483239.1 Coffea arabica FUL (FUL) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027077909.11e-180truncated transcription factor CAULIFLOWER A-like
RefseqXP_027077910.11e-180truncated transcription factor CAULIFLOWER A-like
SwissprotQ424291e-120AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A068VDS11e-178A0A068VDS1_COFCA; Uncharacterized protein
STRINGXP_009625854.11e-132(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-97AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]