PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g00230
Common NameGSCOC_T00036100001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 452aa    MW: 52019.8 Da    PI: 4.3765
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g00230genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.55e-139593688
                 EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
           B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
                   l+d+ g++W v++   + ++ +++ +GW eFv++n ++ gDf+vF++dg+s
  Cc00_g00230  9 AYLRDRFGNKWPVRV--GRIGDDFFFLDGWAEFVEENSVELGDFLVFQYDGHS 59
                 689************..99999999999*********************9853 PP
2B335.51.8e-11359440993
                  HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                   + +++ l++p + +++h++k   +++++l d++gr+W+ + +++k + r++  +GW++ ++ n +   D+++ +++++ ++ l+
  Cc00_g00230 359 RARRQDALYVPHDILRDHNLK--LPQEIILVDQQGREWTSTRNHWKDG-RFWYHGGWSSLCRVNIVGFDDICICEFKRKVGGGLY 440
                  5567789***********999..7889***************999996.788899******************998876444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.563169IPR003340B3 DNA binding domain
SMARTSM010190.042169IPR003340B3 DNA binding domain
SuperFamilySSF1019361.51E-15671IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.6E-13671IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-10958IPR003340B3 DNA binding domain
CDDcd100171.28E-101157No hitNo description
SuperFamilySSF1019362.55E-15347447IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-14347447IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.955351449IPR003340B3 DNA binding domain
SMARTSM010199.5E-9354449IPR003340B3 DNA binding domain
PfamPF023624.1E-9358440IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MKGKLSPRAY LRDRFGNKWP VRVGRIGDDF FFLDGWAEFV EENSVELGDF LVFQYDGHSL  60
YDVKLLGHSA CEKKGVGALK VLKHEEEEQM EEVCEVKEVE GEEEEEADES NEVKKEEQEE  120
DNREKEEEEG EEETHEDKQE EMEESYSNAT EIDTDQDYIM EEEEDFTEEA EEEEKDMEEE  180
QPSKADITAT PGTSKSTYKG LRKIKGGKQG NNSLEVNGAE TEGEKEQDAD EIEQKKEGAG  240
EINEDKQEKE VGKCYSNTIE TEANSDYMME AEDDSTQKEE EEGNVEEEPA AKTHSKVATV  300
DSKSSSKGRK KIRGGKHESK AVNGHKRRRR WLIDPYGYDL FKSGCISQPK NPYFVTQKRA  360
RRQDALYVPH DILRDHNLKL PQEIILVDQQ GREWTSTRNH WKDGRFWYHG GWSSLCRVNI  420
VGFDDICICE FKRKVGGGLY IEVQILRQQD T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308329RKKIRGGKHESKAVNGHKRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066128.10.0B3 domain-containing protein At4g34400-like
TrEMBLA0A068UVB70.0A0A068UVB7_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.12e-11B3 family protein