PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g00220
Common NameGSCOC_T00036099001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 338aa    MW: 39057.4 Da    PI: 8.1971
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g00220genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.52.2e-1716104197
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ffk++    ++++ rl +p  f++ + g+   + +  l+d+ g+ W v+l   +  +++++ +GW +Fvk+n ++ gDf+vF++dg+  f  +vk++
  Cc00_g00220  16 FFKAF--IPNTSTERLKIPIAFTKMIRGS--LPDKAFLRDRYGNIWPVEL--ARIENATFFLEGWAKFVKDNSVELGDFLVFHFDGNCVF--NVKLL 104
                  88999..55667778********999777..6779***************..88888877777**********************99999..77665 PP
2B335.91.3e-112453281096
                  HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  + +++ l++p + +++h+++   + +++l d++ r+W+ +l+ +   gr++  +GW++ ++ n + e D+++ ++++r+++ l++ v
  Cc00_g00220 245 TKRQDELYVPVDVVKDHNLE--FPPEIVLHDPKEREWRARLRRWSD-GRIWYCGGWRSLCRLNLVGEEDICICEFVKREGGGLRINV 328
                  567799***********877..6779***************65555.4566677********************9998877676654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-219108IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-2310109IPR015300DNA-binding pseudobarrel domain
CDDcd100174.63E-1614104No hitNo description
PROSITE profilePS5086313.78914107IPR003340B3 DNA binding domain
PfamPF023627.2E-1516102IPR003340B3 DNA binding domain
SMARTSM010198.0E-1616107IPR003340B3 DNA binding domain
SuperFamilySSF1019366.87E-18232319IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-16233332IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.969236332IPR003340B3 DNA binding domain
CDDcd100178.10E-9237321No hitNo description
SMARTSM010199.1E-11239334IPR003340B3 DNA binding domain
PfamPF023622.5E-9244327IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MVKGKRKDDS NRIPAFFKAF IPNTSTERLK IPIAFTKMIR GSLPDKAFLR DRYGNIWPVE  60
LARIENATFF LEGWAKFVKD NSVELGDFLV FHFDGNCVFN VKLLGHTACD KKGVGGRMFK  120
VKEEEENEKE EDEKGENESL QNNYNTVDET DHNEEYNAEE EEEEEEEMQV QQKAKSNQRA  180
AKPKASCKGL KKIKKSINGI HKSGTEASKC NLWKAKRIDA YGFNLFKSGK IPQPKNPYFV  240
TKVRTKRQDE LYVPVDVVKD HNLEFPPEIV LHDPKEREWR ARLRRWSDGR IWYCGGWRSL  300
CRLNLVGEED ICICEFVKRE GGGLRINVTF VRPEDLA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066443.10.0B3 domain-containing protein REM20-like
RefseqXP_027070271.10.0B3 domain-containing protein REM20-like
TrEMBLA0A068UW440.0A0A068UW44_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.13e-21B3 family protein