PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10028442m | ||||||||
Common Name | CARUB_v10028442mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 152aa MW: 17682.2 Da PI: 9.1984 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 68.8 | 1.5e-21 | 6 | 133 | 6 | 127 |
NAM 6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekew...yfFskrdkkyatgkrknratksgyWkatgkdkevls 94 F+P d+el+ yL++k+++++ + ikevd++k+eP+d++ ++e e ++ + + + + ++r+ k+g Wk tg+++ v++ Carubv10028442m 6 TFNPFDHELI-AYLNRKITEEEDKD---IKEVDLCKHEPEDIKeVdL-CKHEPEDipgKLNLRTCSLNGRLQLTKRSCKTGNWKITGRTTFVKN 94 5*********.9********99544...8999999999999973332.222222212233334444445667899999**************** PP NAM 95 kkgelvglkktLvfy.......kgrapkgektdWvmheyr 127 +++++g kk Lvfy + r+pk k+dWvmhey+ Carubv10028442m 95 VNDKTIGYKKYLVFYlngdkssSTRTPK-IKSDWVMHEYS 133 ***************8666543334444.59********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 19.939 | 1 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-13 | 6 | 133 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.15E-21 | 6 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MSDQHTFNPF DHELIAYLNR KITEEEDKDI KEVDLCKHEP EDIKEVDLCK HEPEDIPGKL 60 NLRTCSLNGR LQLTKRSCKT GNWKITGRTT FVKNVNDKTI GYKKYLVFYL NGDKSSSTRT 120 PKIKSDWVMH EYSSCIRHSK KVRTIHKIIN S* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10028442m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023633377.1 | 7e-90 | NAC domain-containing protein 62 | ||||
TrEMBL | R0GRW6 | 1e-107 | R0GRW6_9BRAS; Uncharacterized protein | ||||
STRING | XP_006282177.1 | 1e-108 | (Capsella rubella) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04430.1 | 1e-16 | NAC domain containing protein 49 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10028442m |
Entrez Gene | 17874971 |