PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10028430m
Common NameCARUB_v10028430mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 475aa    MW: 53493.9 Da    PI: 8.2019
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10028430mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12306351454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +h e+Er RR+++N++f  Lr ++P+       K++K + Le Av+YI++L
  Carubv10028430m 306 NHVEAERMRREKLNNRFYALRAVVPNV-----SKMDKTSLLEDAVRYINEL 351
                      799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.4E-4736232IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474598.9E-17300366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.96E-13301352No hitNo description
PROSITE profilePS5088816.818302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-10306351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-15306372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-14308357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005509Molecular Functioncalcium ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MNNDENLSMI EALLTSDVWP PPPLPPANNL SLETTLQKRL HNVLNGTHVL WTYAVFWKPS  60
YNLLSGDSVL KWGDGVYNGG DEEKNGRRMR RRKKKTVPSS PEGKERRSKV LRELNSMISG  120
EPFPLVEVDD VNDDDDDDVE VTDTEWYYLV SMTWSSCNGS GLAGKAFDTC NPVWVTGLDQ  180
IYGSGCDRAK QGGGLGLQTI VCIPLDNGVL ELGSTELIRH NSDLFNKIRF LFHFEGSKDL  240
SGAPTSTQFR SRIHNPNTNP SPVYQPIQMN ISGEEFNRIN ATVIPEKKPG KKRGRKPNHG  300
REKPLNHVEA ERMRREKLNN RFYALRAVVP NVSKMDKTSL LEDAVRYINE LKSKAENSES  360
GKTAVEIQLK ELKKVMELQN ATSSSVCKDK EKKLSELKME VKVMGSDVMI RVESGKRNHP  420
GARFMNALMD LELEVNHTSI SVMNDLMIQQ ATVKMGLRIY EQEQLRDMLI SKIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A9e-43332346194Transcription factor MYC3
4rqw_B9e-43332346194Transcription factor MYC3
4rs9_A9e-43332346194Transcription factor MYC3
4yz6_A9e-43332346194Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18691RRMRRR
28694RRMRRRKKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00547DAPTransfer from AT5G46830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10028430m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006279851.10.0transcription factor bHLH28
SwissprotQ9LUK70.0BH028_ARATH; Transcription factor bHLH28
TrEMBLR0G8880.0R0G888_9BRAS; Uncharacterized protein
STRINGXP_006279851.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139531624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.10.0NACL-inducible gene 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chen X,Huang H,Qi T,Liu B,Song S
    New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis.
    Plant Signal Behav, 2016. 11(2): p. e1135280
    [PMID:26829586]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Song S, et al.
    MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses.
    Plant Cell Physiol., 2017. 58(10): p. 1752-1763
    [PMID:29017003]
  5. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]