PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10028300m
Common NameCARUB_v10028300mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 273aa    MW: 32144.6 Da    PI: 6.3616
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10028300mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.47.3e-36191121103
                      HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
     HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                      aFl+k+y+i+ed+++++++sws+++nsf+v+++e fa  +Lp+ Fkh+nf+SFvRQLn+YgFkk+++e+         weF++++F kg+++ll
  Carubv10028300m  19 AFLTKTYNIVEDSSTNKIVSWSRDNNSFIVWEPEIFALICLPRCFKHNNFSSFVRQLNTYGFKKIDTER---------WEFANEYFLKGQRHLL 103
                      69****************************************************************999.........**************** PP

                      XXXXXXXXX CS
     HSF_DNA-bind  95 ekikrkkse 103
                      ++ikr+k++
  Carubv10028300m 104 KNIKRRKTS 112
                      ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.3E-5416109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.4E-3616109IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.44E-3516109IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-172043IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-3020109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-175870IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405983IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-177183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEFNLPVPLE GLKETGPTAF LTKTYNIVED SSTNKIVSWS RDNNSFIVWE PEIFALICLP  60
RCFKHNNFSS FVRQLNTYGF KKIDTERWEF ANEYFLKGQR HLLKNIKRRK TSSSQTQTQT  120
HSLEGREIEE MRRDRVALVV ELERLRRKHE TMKTHLHSME EKLRVTEVKQ DMMLDFLLKK  180
ITKPSFLEGL RKRKKQGIKN REQKQEVMSS SHVVEVHETF VKAEPDEYGD ELHIASMEDQ  240
GQEGDELEMD SEGIWKGFML SEEMCDLEEH LI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-23411113131Heat shock factor protein 1
5d5v_B3e-23411113131Heat shock factor protein 1
5d5v_D3e-23411113131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102108LKNIKRR
2190194RKRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00541DAPTransfer from AT5G43840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10028300m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282056.10.0heat stress transcription factor A-6a
SwissprotQ1PDN31e-155HFA6A_ARATH; Heat stress transcription factor A-6a
TrEMBLR0GE220.0R0GE22_9BRAS; Uncharacterized protein
STRINGXP_006282056.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156831416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43840.11e-144heat shock transcription factor A6A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]