PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10028284m
Common NameCARUB_v10028284mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 292aa    MW: 33593.4 Da    PI: 5.082
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10028284mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.11.5e-5261341128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtdeel+ +yLk+kveg ++el evi+ +d+y+++Pw+Lp k  + +++ ew+fF++rdkky++g r+nr tk+gyWkatgkd+++
  Carubv10028284m   6 LPPGFRFHPTDEELIEYYLKRKVEGLEIEL-EVIPVIDLYSFDPWELPdKsFLPNRDMEWFFFCSRDKKYPNGFRTNRGTKAGYWKATGKDRKI 98 
                      79****************************.99**************96435556888************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +s++++ +g +ktLvfykgrap g +++W+mheyrl
  Carubv10028284m  99 TSRSSSIIGFRKTLVFYKGRAPLGDRSNWIMHEYRL 134
                      **********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-603158IPR003441NAC domain
PROSITE profilePS5100558.4146158IPR003441NAC domain
PfamPF023657.5E-297134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGSSCLPPGF RFHPTDEELI EYYLKRKVEG LEIELEVIPV IDLYSFDPWE LPDKSFLPNR  60
DMEWFFFCSR DKKYPNGFRT NRGTKAGYWK ATGKDRKITS RSSSIIGFRK TLVFYKGRAP  120
LGDRSNWIMH EYRLCDDDSS QGPQHFKGAF VLCRVAMKNE IKTNSKIRKI PSEQTIRSGE  180
SSGFSSRVSS PSRDETTPFH SFANPISTEN ESSNIWISPD FILDSSKDYP QIQDVASQYL  240
DQQDFDFSII GNQNMDFLAS TSLDQNMDES MQYWTNCGYD QTGFFGYSEF S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-49615917166NO APICAL MERISTEM PROTEIN
1ut4_B2e-49615917166NO APICAL MERISTEM PROTEIN
1ut7_A2e-49615917166NO APICAL MERISTEM PROTEIN
1ut7_B2e-49615917166NO APICAL MERISTEM PROTEIN
3swm_A2e-49615920169NAC domain-containing protein 19
3swm_B2e-49615920169NAC domain-containing protein 19
3swm_C2e-49615920169NAC domain-containing protein 19
3swm_D2e-49615920169NAC domain-containing protein 19
3swp_A2e-49615920169NAC domain-containing protein 19
3swp_B2e-49615920169NAC domain-containing protein 19
3swp_C2e-49615920169NAC domain-containing protein 19
3swp_D2e-49615920169NAC domain-containing protein 19
4dul_A2e-49615917166NAC domain-containing protein 19
4dul_B2e-49615917166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the positive regulation of abscisic acid (ABA) responsive genes. Acts as a positive factor of ABA-mediated responses. Involved in the transcriptional activation of ABA-inducible genes in response to dehydration and osmotic stresses. Plays a positive role in both stomatal closure and water loss under dehydration stress conditions. Acts synergistically with ABF2 to activate the dehydration stress-response factor RD29A transcription. Binds to the consensus core cis-acting elements 5'-CGTA-3' and 5'-CACG-3' at the RD29A promoter (PubMed:24285786). Involved in hypocotyl graft union formation. Required for the auxin-mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:25182467). {ECO:0000269|PubMed:24285786, ECO:0000269|PubMed:25182467}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00546DAPTransfer from AT5G46590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10028284m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), dehydration and osmotic stress. {ECO:0000269|PubMed:24285786}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0203050.0BT020305.1 Arabidopsis thaliana At5g46590 gene, complete cds.
GenBankBT0205550.0BT020555.1 Arabidopsis thaliana At5g46590 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282042.10.0NAC domain-containing protein 96
SwissprotQ9LS240.0NAC96_ARATH; NAC domain-containing protein 96
TrEMBLR0GRG90.0R0GRG9_9BRAS; Uncharacterized protein
STRINGXP_006282042.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21512777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.10.0NAC domain containing protein 96
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]