PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10028208m
Common NameCARUB_v10028208mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 616aa    MW: 69375 Da    PI: 6.4517
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10028208mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS400.32e-1222296031374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkf 93 
                      l++lL++cA+av+s d+++a++ L++++ ++s+dgd +qRla+yf+eAL+ar+++   + +++ +p+s+ts   +++ l+a+klf++++Pi+  
  Carubv10028208m 229 LRSLLTQCAQAVASFDQRRATEKLKEIRSHSSSDGDGTQRLAFYFAEALEARITGnIPPPVSSPFPSSTTS---MVDILKAYKLFVHTCPIYVT 319
                      6899***************************************************5556677777777777...******************** PP

             GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                       +++aN+ I+e + +++++Hi+Df++ +G+QWp+Ll aL++Rp+gpp+lRiTg++ p+sg   ++++eetg+rL++f+++++vpfefn+ +ak+
  Carubv10028208m 320 DYFAANKSIYELAVTATTLHIVDFGVLYGFQWPCLLLALSKRPGGPPKLRITGIELPQSGfrPSDRVEETGRRLKRFCDKFNVPFEFNF-IAKK 412
                      ***********************************************************9*****************************.7*** PP

             GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                      +e+++l+e+ ++pgE+++Vn++++l++++de+vsl+s+rd+vLkl+++++P+++v++e +  +ns+ F++rf eal ++s+lfd++++++ +e+
  Carubv10028208m 413 WESISLDEIVINPGETTVVNCIHRLQYTPDETVSLDSPRDTVLKLFRDINPDLFVFAEINGMYNSPFFMTRFREALFHFSSLFDMFDTTIQAED 506
                      *****************************************************************************************99998 PP

             GRAS 280 ..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                        ++r+ +E+ell r++++v++ egaer++r et+++Wr r+ +aGFk++++s++++k+ak ++rk + + + ++++++++++gWk+r ++++S
  Carubv10028208m 507 eyKNRALLEKELLVRDAMSVISSEGAERFARPETYKQWRVRILRAGFKSATISKQIMKEAKEIVRKRYHRDFVIDSDNNWMLQGWKGRVIYAFS 600
                      899*****************************************************************999*********************** PP

             GRAS 372 aWr 374
                      +W+
  Carubv10028208m 601 CWK 603
                      **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.966203583IPR005202Transcription factor GRAS
PfamPF035146.8E-120229603IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MDALLQVSVD GFRFENGGSG SCCKPRNNLE SGNHLFPGFH EAQSQSQSSS PNDSPPSMCL  60
DNSPVLKYIN DMLMDEGDFV GESQDNLALQ AAERSFYEIL QQPSSESDQT TSSSDQNSGG  120
DPFFTSISNT TTSTDSAALV SSGESQRKYR HRSDEEDDLE TNRRNKQPAI FGSEMEELAV  180
KLEHVLLVCK SNQQEEESAI SKQSQPNRAG RAKGSSNKSK TRKSNSVDLR SLLTQCAQAV  240
ASFDQRRATE KLKEIRSHSS SDGDGTQRLA FYFAEALEAR ITGNIPPPVS SPFPSSTTSM  300
VDILKAYKLF VHTCPIYVTD YFAANKSIYE LAVTATTLHI VDFGVLYGFQ WPCLLLALSK  360
RPGGPPKLRI TGIELPQSGF RPSDRVEETG RRLKRFCDKF NVPFEFNFIA KKWESISLDE  420
IVINPGETTV VNCIHRLQYT PDETVSLDSP RDTVLKLFRD INPDLFVFAE INGMYNSPFF  480
MTRFREALFH FSSLFDMFDT TIQAEDEYKN RALLEKELLV RDAMSVISSE GAERFARPET  540
YKQWRVRILR AGFKSATISK QIMKEAKEIV RKRYHRDFVI DSDNNWMLQG WKGRVIYAFS  600
CWKPAGKLPN NHVNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A9e-4523560424379Protein SCARECROW
5b3h_D9e-4523560424379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10028208m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281984.10.0scarecrow-like protein 11
SwissprotQ9LTI50.0SCL11_ARATH; Scarecrow-like protein 11
TrEMBLR0EZX70.0R0EZX7_9BRAS; Uncharacterized protein
STRINGXP_006281984.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]