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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10028160m | ||||||||
Common Name | CARUB_v10028160mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 234aa MW: 26980.4 Da PI: 10.2052 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.1 | 4.7e-14 | 56 | 103 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W + Ed +l + v+q+ g W++Ia+ + gRt+kqc++rw+++l Carubv10028160m 56 KGKWGKSEDMKLNQMVEQYDGIiKWASIAKNLK-GRTGKQCRERWHNHL 103 79******************87**********9.*************97 PP | |||||||
2 | Myb_DNA-binding | 51.6 | 2.2e-16 | 110 | 151 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT+eEd++lv ++k G++ W +I+++++ gRt++++k+rw+ Carubv10028160m 110 TAWTKEEDQILVAVHKVVGTK-WYSISQHLP-GRTENNIKNRWN 151 68*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.08E-8 | 42 | 100 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.273 | 51 | 103 | IPR017930 | Myb domain |
SMART | SM00717 | 5.2E-13 | 55 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-25 | 57 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.96E-12 | 58 | 103 | No hit | No description |
Pfam | PF13921 | 2.2E-15 | 59 | 118 | No hit | No description |
SuperFamily | SSF46689 | 1.63E-28 | 83 | 161 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.575 | 104 | 158 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-14 | 108 | 156 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-21 | 110 | 156 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.14E-10 | 111 | 154 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MGEPQSFDMP VPEDIKNTTS EIMNQGKGQK MVRTHQKKNK KIVQTSNHSK KSNIIKGKWG 60 KSEDMKLNQM VEQYDGIIKW ASIAKNLKGR TGKQCRERWH NHLRPGIKKT AWTKEEDQIL 120 VAVHKVVGTK WYSISQHLPG RTENNIKNRW NATKRRVQNQ SGENSNLADN NVLENYIRYI 180 TINNDNLSKT SEDVNLNMDV GTQTNEPLVN ASTTSYYVPM PENFTWENYA REF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-37 | 53 | 156 | 4 | 106 | B-MYB |
1gv2_A | 6e-37 | 54 | 156 | 2 | 103 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10028160m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023632649.1 | 1e-172 | transcription factor MYB115 | ||||
TrEMBL | R0GJE8 | 1e-172 | R0GJE8_9BRAS; Uncharacterized protein | ||||
STRING | XP_006279527.1 | 1e-173 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13303 | 14 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40430.1 | 7e-86 | myb domain protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10028160m |
Entrez Gene | 17874726 |