PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10028009m
Common NameCARUB_v10028009mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family FAR1
Protein Properties Length: 810aa    MW: 94156 Da    PI: 7.3087
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10028009mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.72.3e-19106188390
             FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      Y++Y+ + GF+vrk++ kk   ++++++  +vCsk+g+r+e++ k   ++ +++ tr+gC+a+++  ++k+gk+++ ++e +HnH+l+
  Carubv10028009m 106 YKKYGGSHGFNVRKQRRKKI--KEKVVRLLYVCSKQGYRKEHTVK---KSYSQPITRCGCNAHMTCYLQKSGKYKIVSFEPNHNHDLV 188
                      9************9987776..7789*************998665...999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-16106188IPR004330FAR1 DNA binding domain
PfamPF105511.8E-36310404IPR018289MULE transposase domain
PROSITE profilePS509669.705590626IPR007527Zinc finger, SWIM-type
PfamPF044348.5E-6595626IPR007527Zinc finger, SWIM-type
SMARTSM005751.8E-4601628IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    Send to blast
MESSHLSGHE AVLHDQCESI LQVSGEFSLL SQNSKEVLVE EEEDDLISED EASISEFEEE  60
DEIGNKEDYV QTEDIAGLEP NKENEKKDEL CTEMEFSSDE AAYIAYKKYG GSHGFNVRKQ  120
RRKKIKEKVV RLLYVCSKQG YRKEHTVKKS YSQPITRCGC NAHMTCYLQK SGKYKIVSFE  180
PNHNHDLVRT PMKHLLKGNR EISVSQKQHA SDADMSGISA KATVEMMSRE VGGRANLGFL  240
EKDYRNYIYR KRMAKMEKGD AGAVLEYFQK KKEDNSSFFY SMQLDEDDMI TNIFWADDRS  300
ISDFNRFGDV VCFDTTYKTN EYDRPFAPFV GVNHHKQTIV FGAALLYDET TESYKWLFET  360
FLGAMSGKQP KTILTDQCAA MANAIMKVFP ETKQRLCVWH IYQNAAKKLS HIFHGVEQFA  420
MDLSKCVYDH EEEEDWLFAW SDMLKKHNLT ENKWLKNLFE LREKWAMVYG RHTFTADMVS  480
TQRSESMNNI LKKYLKRSYD LLCFFEHYER VLEDRRYKEL IADFNMMHTS PVLSATVEML  540
QHAEEVYTPE VFSLFQKQYT VIGDYVAKKV SKSEMVYEYK VSFRGVAREH LVNYDATNEK  600
IHCSCMKFSF AGILCRHALK VLDKKNVRRI PSAYILNRWS KEAKARSISY YHSERHSETV  660
KQSIGRRYSH ICRTFREIAS VAADHIELTL CANEFAFQLL KKLEEKKKEL LRTSDVELVE  720
EEKEEEEENE DEEVTNARGI KRKASLGRSK KKKVGPHGRY LSVLETKNRR ISKALSSATA  780
KKKLSFQVLN NIIFLIVYDF MSNGHLNVN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10028009m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022552503.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLR0EZH30.0R0EZH3_9BRAS; Uncharacterized protein
STRINGXP_006281824.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-136FAR1-related sequence 5