PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10027979m

Common Name

CARUB_v10027979mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

M-type_MADS

Protein Properties

Length: 287aa MW: 33093.8 Da PI: 8.6227

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10027979m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	50.6	2.5e-16	10	52	2	44
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 ri n+ r +t+ kR++ + KKA E S+LC+++ ++i++++t Carubv10027979m 10 RIANDKTRITTYKKRKANLYKKAAEFSTLCGVKTCLIVYGPTK 52 89**************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00266	1.48E-24	1	81	No hit	No description
SMART	SM00432	5.3E-13	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	15.18	1	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-7	3	23	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.67E-17	6	86	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.3E-16	10	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-7	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-7	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MTQKIVNLQR IANDKTRITT YKKRKANLYK KAAEFSTLCG VKTCLIVYGP TKATDEVVSE 60 PEIWPRDETE VRDIIRKYKD SVSNTCKKET HVETFVNDLG KAKDMGTTNK RVPRSSENKY 120 CSWEQKLDKC SREQLCGIFC AVDNKLHEAA MRQERSMFMA HHQAMDTPIQ QSLMEQHYMQ 180 QYLPEQPQFQ GFPNNYNNMG FSFIPPHDDQ IQMDPILMEN LTSLGLNQGL MMSKGNDVTQ 240 LMQRQAQPYY NREPVVQRPA AYNVNPFAGY QVPFNIPWDL SGKKTI*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10027979m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006281804.1	0.0	agamous-like MADS-box protein AGL82
Swissprot	Q9FIM0	1e-159	AGL82_ARATH; Agamous-like MADS-box protein AGL82
TrEMBL	R0EZF4	0.0	R0EZF4_9BRAS; Uncharacterized protein
STRING	XP_006281804.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5948	19	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58890.1	1e-161	AGAMOUS-like 82

Link Out ? help Back to Top
Phytozome	Carubv10027979m
Entrez Gene	17875369

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]