PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10027934m
Common NameCARUB_v10027934mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 379aa    MW: 44006.1 Da    PI: 4.5579
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10027934mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.52.2e-22111593128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkya....tgkrknra......tksgyW 83 
                       Gf+F+P+d+e++++yLk+ ++g+     ++i   d+y  ePw L++ +++   +e+ewy+F+++ + ++     gk ++r+      t+ g W
  Carubv10027934m  11 EGFHFDPSDDEIINCYLKPMLRGEYRGR-DFIGMEDVYAKEPWLLNQ-TNHpilQEDEWYYFTTKTQISKekvgCGKYSKRKiigddgTDLGNW 102
                      59*********************99766.99**************84.222345888******9987665333356677776789999999*** PP

              NAM  84 katgkdkevlskkgelvglkktLvfy............kgrapkgektdWvmheyrl 128
                      +a g++  + +++g  +g+++ L+++             g ap  ++++W+m+e+rl
  Carubv10027934m 103 SANGTKDIIDEETGDIIGIRQNLTYHsprkskkhkrgdGGAAPIDVSCSWIMDEFRL 159
                      *****9989888999***********77766554444336777788*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100529.3739179IPR003441NAC domain
PfamPF023651.5E-1411159IPR003441NAC domain
SuperFamilySSF1019417.98E-2712179IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MTTEYYEDDD EGFHFDPSDD EIINCYLKPM LRGEYRGRDF IGMEDVYAKE PWLLNQTNHP  60
ILQEDEWYYF TTKTQISKEK VGCGKYSKRK IIGDDGTDLG NWSANGTKDI IDEETGDIIG  120
IRQNLTYHSP RKSKKHKRGD GGAAPIDVSC SWIMDEFRLP TDKDNETFQE LVLCKIHKKK  180
WCKKKGKGKE IAHHEEDEDD EDDEEIVPCK KHTKRKSKKK KEFYQHDDEA STSTSHYDQH  240
DPYSSWEQQQ QKEALKTSHY GQHEPSSYWE EQQQKDTPTI EKELTEITGE GGGDWTAYMI  300
EKLMADVDGT GQVPEKASTC TSHYQQHESS SSWREEQQQK DSPATEKDEQ VEATEIRRED  360
EEEWTADMIE ELIGAPIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-131218020166NO APICAL MERISTEM PROTEIN
1ut4_B1e-131218020166NO APICAL MERISTEM PROTEIN
1ut7_A1e-131218020166NO APICAL MERISTEM PROTEIN
1ut7_B1e-131218020166NO APICAL MERISTEM PROTEIN
3swm_A2e-131218023169NAC domain-containing protein 19
3swm_B2e-131218023169NAC domain-containing protein 19
3swm_C2e-131218023169NAC domain-containing protein 19
3swm_D2e-131218023169NAC domain-containing protein 19
3swp_A2e-131218023169NAC domain-containing protein 19
3swp_B2e-131218023169NAC domain-containing protein 19
3swp_C2e-131218023169NAC domain-containing protein 19
3swp_D2e-131218023169NAC domain-containing protein 19
4dul_A1e-131218020166NAC domain-containing protein 19
4dul_B1e-131218020166NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213221KRKSKKKKE
2214221RKSKKKKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10027934m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023633431.10.0NAC domain-containing protein 53-like
TrEMBLR0GU200.0R0GU20_9BRAS; Uncharacterized protein
STRINGXP_006281770.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.22e-12NAC domain containing protein 50