PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10027909m
Common NameCARUB_v10027909mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 321aa    MW: 36608.8 Da    PI: 4.0925
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10027909mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.6e-1518108196
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                      ffkv +p d++  + l +p +f++     ++ + t+t+++ sg  W++++  rk+sg+   +vl +GWk  vk+ +Lk gDf+ F++dg++ f 
  Carubv10027909m  18 FFKVYLPDDSG--DDLEIPISFTRFLP--EPFPETVTVRSISGSLWTLQF--RKCSGEverFVLVDGWKMIVKDEDLKGGDFLGFEFDGSQLF- 104
                      78888666655..459******97665..56889****************..888887778*************************9986666. PP

                      .EEEE CS
               B3  92 lvvkv 96 
                       ++ +
  Carubv10027909m 105 -NFCI 108
                      .5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-1912111IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-1715111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.26616112IPR003340B3 DNA binding domain
CDDcd100175.57E-1816109No hitNo description
PfamPF023622.6E-1318110IPR003340B3 DNA binding domain
SMARTSM010191.5E-1518112IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-11215319IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.3E-8215318IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MWFSICEGKY LEDCLPKFFK VYLPDDSGDD LEIPISFTRF LPEPFPETVT VRSISGSLWT  60
LQFRKCSGEV ERFVLVDGWK MIVKDEDLKG GDFLGFEFDG SQLFNFCIYE RETMCKRLRH  120
CSEQSEELIV ESDIEEGTQD SDDDDVSALD DDSEDSDYNY VEDYDSDAAL EEEDNDGDET  180
DIYVVNDAAT EENDVDVEAF KLGDHASEDD RNHLDDPENP SFTLRLNPKK KSQLLIPARV  240
INDYGLHFPE SITLVDPLVK KFGTLEKLIK IQTNGSVFVK GFGSIIRRNK VKTTDKMICE  300
MEKTGDNNMV QTMKIHIIRG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A6e-131711510104At1g16640
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00569DAPTransfer from AT5G60130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10027909m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0567301e-103DQ056730.1 Arabidopsis thaliana transcriptional factor B3 family protein (At5g60130) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023638315.10.0B3 domain-containing protein At5g60130
SwissprotQ9LVG11e-134Y5013_ARATH; B3 domain-containing protein At5g60130
TrEMBLR0GU010.0R0GU01_9BRAS; Uncharacterized protein
STRINGXP_006281750.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60130.21e-129B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]