PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10027348m
Common NameCARUB_v10027348mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NF-YC
Protein Properties Length: 137aa    MW: 15211.5 Da    PI: 10.401
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10027348mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC48.22.4e-1513921997
            NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                      e+P+ r+kki+k d+d+++i +ea  l++ + elf+  l+ +s + + e+krr +    + +av+r + + dfl+d  p
  Carubv10027348m 13 PEFPIGRVKKIMKLDKDINKINSEALHLITYSAELFLHFLAEKSAVVTAEKKRRIVSLDHLRTAVKRHQpTSDFLLDSLP 92
                     589**************************************************************9976489*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.02E-1710104IPR009072Histone-fold
PfamPF008081.9E-191477IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.1E-191592IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MAEEEGSQSP IRPEFPIGRV KKIMKLDKDI NKINSEALHL ITYSAELFLH FLAEKSAVVT  60
AEKKRRIVSL DHLRTAVKRH QPTSDFLLDS LPLPSQPIRH NKTASSDKKA PPTPPVGTRR  120
IDDFFSKGKA KADDSA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10027348m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281298.12e-94nuclear transcription factor Y subunit gamma
TrEMBLR0EZ144e-93R0EZ14_9BRAS; Uncharacterized protein
STRINGCagra.25491s0001.1.p6e-94(Capsella grandiflora)
STRINGXP_006281298.16e-94(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128602530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.11e-60nuclear factor Y, subunit C13