PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10027180m
Common NameCARUB_v10027180mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 195aa    MW: 22970.8 Da    PI: 4.6347
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10027180mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.27.1e-32171381128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrF+P de+lv eyL+kkv ++++++   ++e++ ++v+PwdL     +++ke+y+F+k+++++    rk r t sgyW++  + +ev++
  Carubv10027180m  17 LPPGFRFDPDDEDLVFEYLAKKVLHRPMDF--DLPELRSCNVDPWDLL---GEKNKEVYYFVKKEERE----RKGRETLSGYWEECEE-EEVME 100
                      79*************************999..49*************6...56789*******99875....899********98866.67777 PP

              NAM  95 k....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +     g+l g +kt++fy g++p+g+ t W+m e+rl
  Carubv10027180m 101 AgdreCGHLEGRRKTFAFYIGKKPRGTITPWIMYEFRL 138
                      6466666679**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-347165IPR003441NAC domain
PROSITE profilePS5100533.58617167IPR003441NAC domain
PfamPF023657.3E-1918138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MDISAQRFAM NGRSMRLPPG FRFDPDDEDL VFEYLAKKVL HRPMDFDLPE LRSCNVDPWD  60
LLGEKNKEVY YFVKKEERER KGRETLSGYW EECEEEEVME AGDRECGHLE GRRKTFAFYI  120
GKKPRGTITP WIMYEFRLLS SRATRWSSSL LPRGDLGKWR AVKVVVKEEN EEEMMVEDEH  180
ESDESDGEEV IQSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-191513915143NO APICAL MERISTEM PROTEIN
1ut4_B6e-191513915143NO APICAL MERISTEM PROTEIN
1ut7_A6e-191513915143NO APICAL MERISTEM PROTEIN
1ut7_B6e-191513915143NO APICAL MERISTEM PROTEIN
3swm_A6e-191513918146NAC domain-containing protein 19
3swm_B6e-191513918146NAC domain-containing protein 19
3swm_C6e-191513918146NAC domain-containing protein 19
3swm_D6e-191513918146NAC domain-containing protein 19
3swp_A6e-191513918146NAC domain-containing protein 19
3swp_B6e-191513918146NAC domain-containing protein 19
3swp_C6e-191513918146NAC domain-containing protein 19
3swp_D6e-191513918146NAC domain-containing protein 19
4dul_A6e-191513915143NAC domain-containing protein 19
4dul_B6e-191513915143NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10027180m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0151500.0BT015150.1 Arabidopsis thaliana At5g50820 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281147.11e-141NAC domain-containing protein 41
TrEMBLR0GNX91e-139R0GNX9_9BRAS; Uncharacterized protein
STRINGXP_006281147.11e-140(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146661821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50820.11e-95NAC domain containing protein 97