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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10027131m | ||||||||
Common Name | CARUB_v10027131mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ZF-HD | ||||||||
Protein Properties | Length: 211aa MW: 24401.1 Da PI: 10.063 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 83.4 | 2.7e-26 | 56 | 109 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 k +Y +C+kNhAa +G++a+DGCgEf+ +++e +++l+CaACgCHR+FHR v+e Carubv10027131m 56 KPHYTKCMKNHAAGIGTTAYDGCGEFVVKTEE---KDSLNCAACGCHRDFHREVVSE 109 679*************************9444...7****************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 5.1E-21 | 58 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.2E-24 | 58 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 8.0E-16 | 59 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 22.164 | 59 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-21 | 145 | 209 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.76E-12 | 147 | 209 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 5.6E-30 | 152 | 208 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MDETTKPKKQ EDNKPKRRRN IKPICRESGD HVHYPPTHNK PKLKPKPSPI LKVTQKPHYT 60 KCMKNHAAGI GTTAYDGCGE FVVKTEEKDS LNCAACGCHR DFHREVVSET VLEVLKISSV 120 QFRRIFCSPY GGGNSKVKKE EIDGEELVGR VKRLKTKFTA EQTEKMREYA EKLRWKMKAE 180 VRNEVEEFCV EIGVNRKNFR IWMNNHKDKK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 6e-13 | 151 | 208 | 17 | 74 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10027131m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB007647 | 3e-45 | AB007647.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJB21. | |||
GenBank | AY084367 | 3e-45 | AY084367.1 Arabidopsis thaliana clone 105566 mRNA, complete sequence. | |||
GenBank | BT002832 | 3e-45 | BT002832.1 Arabidopsis thaliana clone RAFL14-80-P06 (R20240) unknown protein (At5g42780) mRNA, complete cds. | |||
GenBank | BT004379 | 3e-45 | BT004379.1 Arabidopsis thaliana clone U20240 unknown protein (At5g42780) mRNA, complete cds. | |||
GenBank | CP002688 | 3e-45 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | LN852659 | 3e-45 | LN852659.1 Arabidopsis thaliana mRNA for homeobox protein 27 (AtHB27 gene), ecotype Columbia. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006281101.1 | 1e-155 | zinc-finger homeodomain protein 13 | ||||
Swissprot | Q9FMY7 | 4e-93 | ZHD13_ARATH; Zinc-finger homeodomain protein 13 | ||||
TrEMBL | R0GBJ6 | 1e-154 | R0GBJ6_9BRAS; Uncharacterized protein | ||||
STRING | XP_006281101.1 | 1e-155 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15888 | 11 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42780.1 | 4e-91 | homeobox protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10027131m |
Entrez Gene | 17875636 |