 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Carubv10026931m |
| Common Name | CARUB_v10026931mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 279aa MW: 31333.1 Da PI: 7.802 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Carubv10026931m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 57.1 | 3e-18 | 124 | 178 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++k+q Lee F+++++++ +++ LAkkl+Lt rqV vWFqNrRa+ k
Carubv10026931m 124 RKKLRLSKDQSAFLEETFKEHNTLNPKQKLALAKKLNLTARQVEVWFQNRRARTK 178
788899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 120.4 | 9.1e-39 | 124 | 213 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+kk+rlsk+q+++LEe+F+e+++L+p++K +la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke eLr +l
Carubv10026931m 124 RKKLRLSKDQSAFLEETFKEHNTLNPKQKLALAKKLNLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLQKEAMELR-TL 213
69*************************************************************************************9.44 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009641 | Biological Process | shade avoidance |
| GO:0009734 | Biological Process | auxin-activated signaling pathway |
| GO:0009826 | Biological Process | unidimensional cell growth |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 279 aa
Download sequence Send
to blast |
MMMGKEDLGL SLSLGFSQNH NPLQLNLTPP NSSLSINLQR FPWNQSFDPT SDLRKIDVNS 60
FPSTANCEEE TGVSSPNSTI SSTISGKRCE REDISGADHD DITPDRGYSR GTSDEDDDGG 120
ETSRKKLRLS KDQSAFLEET FKEHNTLNPK QKLALAKKLN LTARQVEVWF QNRRARTKLK 180
QTEVDCEYLK RCVEKLTEEN RRLQKEAMEL RTLKLSPQFY GQMTPPTTLI MCPSCERVAG 240
PSSSNHQHNH RPVSINPWVA CAGQVAHGLN FEALRPRS*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 122 | 128 | SRKKLRL |
| 2 | 172 | 180 | RRARTKLKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF428450 | 0.0 | AF428450.1 Arabidopsis thaliana AT5g47370/MQL5_23 mRNA, complete cds. |
| GenBank | AJ431183 | 0.0 | AJ431183.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT2 (hat2 gene). |
| GenBank | ATU09335 | 0.0 | U09335.1 Arabidopsis thaliana clone HAT2 homeobox protein mRNA, partial cds. |
| GenBank | AY052324 | 0.0 | AY052324.1 Arabidopsis thaliana AT5g47370/MQL5_23 mRNA, complete cds. |
| GenBank | AY061904 | 0.0 | AY061904.1 Arabidopsis thaliana AT5g47370/MQL5_23 mRNA, complete cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G47370.1 | 1e-160 | Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein |
