PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026852m
Common NameCARUB_v10026852mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 305aa    MW: 33997 Da    PI: 7.1299
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026852mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.1e-09163210455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++ Lq
  Carubv10026852m 163 SHSLAERVRREKISERMRILQKLVPGC----DKVTGKALMLDEIINYVQTLQ 210
                      8*************************9....555****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.14E-16157224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.83E-10157214No hitNo description
PROSITE profilePS5088815.32159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-16159220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-6163210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-9165215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MATFSYFQNY PHSLLDPILF PTPPNSSIGL TGFIDQNVLH SLPDVSKIED TSANPFLDEY  60
YNVDKTESYG FKKQANTNKT TTTGSSSCDQ LSQGPATTAI NGKNRRRKIR NVSSSKEGVE  120
GRKTKKPRIN DSPTNVKEKK GSKEEPQKDY IHVRARRGQA TDSHSLAERV RREKISERMR  180
ILQKLVPGCD KVTGKALMLD EIINYVQTLQ NQVEFLSMKL ASTSPVVYDF GSDLDGLILR  240
SEMGSPEVVT SYTNTMPTTT PIFPSLLDNS IVHTHAQLQE EGGEERDEFV DRSGFNDNSF  300
CSFP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026852m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4283501e-170AF428350.1 Arabidopsis thaliana unknown protein mRNA, complete cds.
GenBankAY0575491e-170AY057549.1 Arabidopsis thaliana probable DNA-binding protein mRNA, complete cds.
GenBankAY0876021e-170AY087602.1 Arabidopsis thaliana clone 36971 mRNA, complete sequence.
GenBankAY1130591e-170AY113059.1 Arabidopsis thaliana At5g50917/At5g50917 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280862.10.0transcription factor bHLH137
SwissprotQ93W881e-161BH137_ARATH; Transcription factor bHLH137
TrEMBLR0GN380.0R0GN38_9BRAS; Uncharacterized protein
STRINGXP_006280862.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87962439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-144bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]