PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10026808m | ||||||||
Common Name | CARUB_v10026808mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 316aa MW: 35138 Da PI: 4.5142 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57 | 3.3e-18 | 72 | 125 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++ +LA++l L+ rqV +WFqNrRa++k Carubv10026808m 72 KKRRLSVEQVKALEKNFEIDNKLEPERKVKLAQELALQPRQVAIWFQNRRARWK 125 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 127.4 | 6.2e-41 | 71 | 163 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls eqvk+LE++Fe ++kLeperKv+la+eL lqprqva+WFqnrRAR+ktkqlE+dy +Lk+++dalk+++++L++++++L ++ke Carubv10026808m 71 EKKRRLSVEQVKALEKNFEIDNKLEPERKVKLAQELALQPRQVAIWFQNRRARWKTKQLERDYGVLKSNFDALKRSRDSLQRDNDSLLGQIKE 163 69*************************************************************************************999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.71E-19 | 58 | 129 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.475 | 67 | 127 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-16 | 70 | 131 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.2E-15 | 72 | 125 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.72E-16 | 72 | 128 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-19 | 74 | 134 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 102 | 125 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 6.9E-17 | 127 | 168 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MKRSRGSSDS LPAFLPIRLS TTDKQISPRP TNTGFLYSGA GDYSQMFDAL DDDGSLDDMG 60 GVGHASSTAA EKKRRLSVEQ VKALEKNFEI DNKLEPERKV KLAQELALQP RQVAIWFQNR 120 RARWKTKQLE RDYGVLKSNF DALKRSRDSL QRDNDSLLGQ IKELRAKLNV DGVNGVEENG 180 VVKAAEANET VMANNNEVLE LNQRPPPPPP HIPTEAPTSE LAYEMFSIFP RTESFREEDP 240 ADSSDSSAVL NEEYSPTTVE AAGAVAATAV EMSTTMGCFS QFVKMEEHED LFSGEEACKL 300 FADNEQWFCS DQWNS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 127 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269|PubMed:12678559}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00587 | DAP | Transfer from AT5G65310 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10026808m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:12678559, ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF325054 | 0.0 | AF325054.2 Arabidopsis thaliana AT5g65310 (AT5g65310/MNA5_4) mRNA, complete cds. | |||
GenBank | AY074293 | 0.0 | AY074293.1 Arabidopsis thaliana putative homeobox-leucine zipper protein ATHB-5 (At5g65310) mRNA, complete cds. | |||
GenBank | AY091340 | 0.0 | AY091340.1 Arabidopsis thaliana putative homeobox-leucine zipper protein ATHB-5 (HD-zip protein ATHB-5) (At5g65310) mRNA, complete cds. | |||
GenBank | X67033 | 0.0 | X67033.1 A.thaliana mRNA Athb-5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006280832.1 | 0.0 | homeobox-leucine zipper protein ATHB-5 | ||||
Swissprot | P46667 | 0.0 | ATHB5_ARATH; Homeobox-leucine zipper protein ATHB-5 | ||||
TrEMBL | R0GN08 | 0.0 | R0GN08_9BRAS; Uncharacterized protein | ||||
STRING | XP_006280832.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12986 | 15 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65310.1 | 1e-162 | homeobox protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10026808m |
Entrez Gene | 17875855 |
Publications ? help Back to Top | |||
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