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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Carubv10026808m |
| Common Name | CARUB_v10026808mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
HD-ZIP |
| Protein Properties |
Length: 316aa MW: 35138 Da PI: 4.5142 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Carubv10026808m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 57 | 3.3e-18 | 72 | 125 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ eq+++Le+ Fe ++++ e++ +LA++l L+ rqV +WFqNrRa++k
Carubv10026808m 72 KKRRLSVEQVKALEKNFEIDNKLEPERKVKLAQELALQPRQVAIWFQNRRARWK 125
56689************************************************9 PP
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| 2 | HD-ZIP_I/II | 127.4 | 6.2e-41 | 71 | 163 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
ekkrrls eqvk+LE++Fe ++kLeperKv+la+eL lqprqva+WFqnrRAR+ktkqlE+dy +Lk+++dalk+++++L++++++L ++ke
Carubv10026808m 71 EKKRRLSVEQVKALEKNFEIDNKLEPERKVKLAQELALQPRQVAIWFQNRRARWKTKQLERDYGVLKSNFDALKRSRDSLQRDNDSLLGQIKE 163
69*************************************************************************************999986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009737 | Biological Process | response to abscisic acid |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 316 aa
Download sequence Send
to blast |
MKRSRGSSDS LPAFLPIRLS TTDKQISPRP TNTGFLYSGA GDYSQMFDAL DDDGSLDDMG 60
GVGHASSTAA EKKRRLSVEQ VKALEKNFEI DNKLEPERKV KLAQELALQP RQVAIWFQNR 120
RARWKTKQLE RDYGVLKSNF DALKRSRDSL QRDNDSLLGQ IKELRAKLNV DGVNGVEENG 180
VVKAAEANET VMANNNEVLE LNQRPPPPPP HIPTEAPTSE LAYEMFSIFP RTESFREEDP 240
ADSSDSSAVL NEEYSPTTVE AAGAVAATAV EMSTTMGCFS QFVKMEEHED LFSGEEACKL 300
FADNEQWFCS DQWNS*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 119 | 127 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269|PubMed:12678559}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:12678559, ECO:0000269|PubMed:16055682}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF325054 | 0.0 | AF325054.2 Arabidopsis thaliana AT5g65310 (AT5g65310/MNA5_4) mRNA, complete cds. |
| GenBank | AY074293 | 0.0 | AY074293.1 Arabidopsis thaliana putative homeobox-leucine zipper protein ATHB-5 (At5g65310) mRNA, complete cds. |
| GenBank | AY091340 | 0.0 | AY091340.1 Arabidopsis thaliana putative homeobox-leucine zipper protein ATHB-5 (HD-zip protein ATHB-5) (At5g65310) mRNA, complete cds. |
| GenBank | X67033 | 0.0 | X67033.1 A.thaliana mRNA Athb-5. |
