PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026748m
Common NameCARUB_v10026748mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 337aa    MW: 37658.5 Da    PI: 7.0408
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026748mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.34.4e-1694145155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++    s+K + a+i+  A+++Ik+L+
  Carubv10026748m  94 QRMTHIAVERNRRRQMNQHLSVLRSLMPQP---FSQKGDQASIVGGAIDFIKELE 145
                      79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-1692162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1392147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-1392148No hitNo description
PROSITE profilePS5088816.06993144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-1394145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-1199150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MTLEALSSNG LLNFLLSAET LSPTPFKSLV DDLVPLPDND FILSKNTIME LSHNQELPPP  60
PPRPQRQPQA ANRGKKRRRR KPRVCKNEEE AENQRMTHIA VERNRRRQMN QHLSVLRSLM  120
PQPFSQKGDQ ASIVGGAIDF IKELEHKLLS LEAQKLHNAK SNQTVTSSTS QDSNGEQENP  180
HQQSSSLSLS QFFLHPYDPS QENRNGSTSS VKTPMEDLEV TLIETHANIR ILSRRRGFHW  240
NTMSTTRPPQ LSKLVAALQS LSLSVLHLSV TTLDTYAIYS ISAKVEESCQ LSSVDDIAGA  300
VHHMLSIIEE EPICCSSMSE LPFDFSLNHT NATHSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17480KKRRRRK
27481KKRRRRKP
37580KRRRRK
47682RRRRKPR
594105RMTHIAVERNRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026748m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2216130.0AK221613.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL07-91-M02.
GenBankBT0256630.0BT025663.1 Arabidopsis thaliana At5g46690 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280777.10.0transcription factor bHLH71
SwissprotQ56XR00.0BH071_ARATH; Transcription factor bHLH71
TrEMBLR0GMW00.0R0GMW0_9BRAS; Uncharacterized protein
STRINGXP_006280777.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103892535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.11e-152beta HLH protein 71
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]