PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026640m
Common NameCARUB_v10026640mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 365aa    MW: 39955.4 Da    PI: 8.1832
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026640mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.31.3e-0890114326
                      S---SGGGGTS.--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartG.tCkyGdrCkFaHg 26 
                       e C+ f+r G  C++Gd C F+Hg
  Carubv10026640m  90 GEVCPEFSRHGgDCSRGDECVFSHG 114
                      589*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.6E-487115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.02388116IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-691114IPR000571Zinc finger, CCCH-type
SMARTSM003562.5124147IPR000571Zinc finger, CCCH-type
PfamPF146080.32130145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000932Cellular Componentcytoplasmic mRNA processing body
GO:0010494Cellular Componentcytoplasmic stress granule
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDVGHINRPT VDISPRKLLS SAKSPSSSPL QDYSYDSDSE DPYAGDHFRM YEFKIRRCTR  60
SRSHDWTDCP FSHPGEKARR RDPRRFHYTG EVCPEFSRHG GDCSRGDECV FSHGVFECWL  120
HPSRYRTEAC KDGKHCKRKV CFFAHSPRQL RVLPPSPPEN FISGGSASSS PASVLGHKNN  180
RCCLFCSHSP TSTLLGLSRS PSSSPPLSPA DKAAAFSRLS RRRTAVLNEL ISSLDSFSLT  240
EALASSSSSS PGTMPVSTAA MIASANLSNH RIPPWLDVGD RDLQIQQTSP LQFSHSPSST  300
PSYLHSQLQP PLSSFFSDDF TPRGGRVSDF TAAASAAAEA KYKTSFEVGS SSDLDLGWVN  360
DLLT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026640m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280675.10.0zinc finger CCCH domain-containing protein 61
SwissprotQ9FKW20.0C3H61_ARATH; Zinc finger CCCH domain-containing protein 61
TrEMBLR0GQY40.0R0GQY4_9BRAS; Uncharacterized protein
STRINGXP_006280675.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44260.11e-158C3H family protein