PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026427m
Common NameCARUB_v10026427mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 437aa    MW: 47691.2 Da    PI: 9.4061
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026427mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.86e-06392413526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C+ff r   C+ G++C + H+
  Carubv10026427m 392 QCMFFNRAKGCRLGESCLYLHD 413
                      5********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.075388415IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MKKTGKKKSS RVSWASDSLL SQVKMFLTDD CPAEVASSNL PPGFEASDYA SRRTSTIPLI  60
KWIPPPKFII DDAFLGGTGG DSTETPSENL RIAKVLEAFY PHRSVIPARP SVSPAVEQSH  120
YDDSYTPIIR LTPIEDDRAA ALQSSSHHFE APSAVSLLGP ELSLAASAAL SALTKEQGCQ  180
VDAALLVKLL SDPKIVANLL NDMNSKPLET ANGDSMNTDI TNPRLHIPRN GVPHNVHVPV  240
QSSATVPPLP KPTQPMSTAL SMKPTLVPLS SGIEPLTRVE EEDSYTAAPL KPSPVENVLV  300
SEQKTQSLNV SASSTRDINR IPESAQTETD LQIRNGNINR GDQVSAKPVK NLDYFKNLIR  360
EHGGVSPATN QNNNYKGRVD DMKVVKVKIQ KQCMFFNRAK GCRLGESCLY LHDRSKRLWA  420
DVAPRFPKAK RLKYRS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026427m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006279622.10.0zinc finger CCCH domain-containing protein 68
SwissprotQ9FH610.0C3H68_ARATH; Zinc finger CCCH domain-containing protein 68
TrEMBLR0GJQ80.0R0GJQ8_9BRAS; Uncharacterized protein
STRINGXP_006279622.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87041112