PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026241m
Common NameCARUB_v10026241mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 514aa    MW: 56416.8 Da    PI: 6.6824
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026241mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-08322369455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Carubv10026241m 322 SHSLAERVRREKIGERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 369
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.35E-9316373No hitNo description
SuperFamilySSF474592.88E-16316382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-16318383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.37318368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-5322369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-10324374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MENELFMNTE FPPPPPEFEP PSSSSAMMLN WALMDPTNPQ QDPSFLWEKS TEQQQSIFDS  60
ALSSLVSSPT PSNSNFSGGC GGGVGGGGDG FIIRELIGKL GNIGNNHNIS GEIYGTTTPM  120
SRSASCYATP MSSPPPPPPP SASSNSQIMM NRTTPLTEFS ADPGFAERAA RFSCFGSRSF  180
NGRTNSHLPI NNNVVNNSGK LTRVSSTPAL NGLVSPELAP MIPGGEFSRK RKSLPKGKPK  240
ENPISTASPS PSFSKTAEKK EDWSGKGSKS LEEKVGKRRR DEEEDNVDEE GGEGNKNNNT  300
KPPEPPKDYI HVRARRGQAT DSHSLAERVR REKIGERMKL LQDLVPGCNK VTGKALMLDE  360
IINYVQSLQR QVEFLSMKLS SVNDTRLEFN VDALVSKDVV MIPSSNNNNR LHEEGLQSKS  420
SSHHHHHHHQ QQQLNNIYNN NSQLHPNNMM LQSPMNSLET SSLARSFTHL PTLTQFTDSI  480
SQYQMFSEED LQSIVGMGVA QPNNESQHMK LEI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227232SRKRKS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250|UniProtKB:Q8GY61, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00036PBMTransfer from AT5G48560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026241m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280318.10.0transcription factor bHLH78
SwissprotQ9FJL40.0BH078_ARATH; Transcription factor bHLH78
TrEMBLR0EWH50.0R0EWH5_9BRAS; Uncharacterized protein
STRINGXP_006280318.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]