PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026070m
Common NameCARUB_v10026070mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 641aa    MW: 71248.3 Da    PI: 7.4977
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026070mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-1585132148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+ Ede+l+ +v++ G g+W+++ +  g+ R++k+c++rw ++l
  Carubv10026070m  85 KGPWTAAEDEILAAYVRENGEGNWNAVQKNTGLARCGKSCRLRWANHL 132
                      79******************************************9986 PP
2Myb_DNA-binding46.11.1e-14138181146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T +E+ l++++++qlG++ W++ a+ ++ gRt++++k++w++
  Carubv10026070m 138 KGSFTGDEERLIIQLHAQLGNK-WARMAAQLP-GRTDNEIKNYWNT 181
                      789*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.31780132IPR017930Myb domain
SuperFamilySSF466897.42E-2884179IPR009057Homeodomain-like
SMARTSM007171.6E-1284134IPR001005SANT/Myb domain
PfamPF002492.9E-1485132IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2186139IPR009057Homeodomain-like
CDDcd001674.42E-1087132No hitNo description
PROSITE profilePS5129424.478133187IPR017930Myb domain
SMARTSM007172.5E-15137185IPR001005SANT/Myb domain
PfamPF002492.2E-13138181IPR001005SANT/Myb domain
CDDcd001671.12E-10140183No hitNo description
Gene3DG3DSA:1.10.10.604.3E-24140185IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
KKQIQNRDNK YFSDGLTWGV KITLCVSPFS NPPNHKRHSE ICFFLFFLSL LESAREEAMM  60
IYGGGAGKDG GSTNHTSDGG VILKKGPWTA AEDEILAAYV RENGEGNWNA VQKNTGLARC  120
GKSCRLRWAN HLRPNLKKGS FTGDEERLII QLHAQLGNKW ARMAAQLPGR TDNEIKNYWN  180
TRLKRLQRQG LPLYPPDIIP NHQLHPHPHH QQQQQHNHHH HQQQHHQQMY FQPQSSQPNT  240
PSSSPLPSPR PLNANANSSS SFTFHTTTAN LLHPLSPHTP NTPQTPSQLS STPPPPPLSS  300
PLSSPRNNQY PTLPLFALPR SQINSNDANF TFPRPPPLLQ QQPSSLLAKR YNNTNTPLNC  360
INRVSTAPFS PVSRESYTSF LTLPYPSPTA QTATYNNTNN NYSSSPSFSL NPSSSYPTST  420
SSPSFLHSHY SPSSTSFPTN PVYSMKQDQL PSNQIPQIEA FNNFNSFTDN ERQNHNLNSS  480
GVHNHRRSSS CSLLEDVLEE AEVLAAGGRG RPLKRRQLTA SPPNHHNNDN DNFFSVSFGD  540
YDSSDNICSL QDLKSKEEES LHINTMQEDI AKLLDWGSDS GEISNGQSSV VTDDNLVLDV  600
HHLASLFPAD STTAVATATN DQHNNNNNNN CSWDDMQGLS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-29821851103C-Myb DNA-Binding Domain
1msf_C7e-29821851103C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1510515RPLKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:24278028). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter to promote their expression (By similarity). Together with MYB97 and MYB101, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000250|UniProtKB:O80883, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026070m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in pollen tube 4 hours after pollen germination. {ECO:0000269|PubMed:19714218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5440140.0KC544014.1 Arabidopsis thaliana transcription factor MYB120 (MYB120) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006279592.20.0transcription factor MYB120
SwissprotQ94FL70.0MY120_ARATH; Transcription factor MYB120
TrEMBLR0GJN20.0R0GJN2_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006279592.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99391934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55020.11e-85myb domain protein 120
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]