 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Carubv10026052m |
| Common Name | CARUB_v10026052mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
ARR-B |
| Protein Properties |
Length: 656aa MW: 72406.2 Da PI: 5.7429 |
| Description |
ARR-B family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Carubv10026052m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 93.5 | 1.6e-29 | 201 | 254 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W++eLH++Fv+av+qL G +kA+Pk+il+lm+++gLt+e+v+SHLQkYRl
Carubv10026052m 201 KPRVVWSQELHQKFVNAVQQL-GLDKAVPKKILDLMNIEGLTRENVASHLQKYRL 254
79*******************.********************************8 PP
|
| 2 | Response_reg | 68.3 | 3.3e-23 | 20 | 127 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92
vl vdD+p+ ++ l+++l + +y +v+ + ++++ale+l+e+ +Dl++ D+emp+ dG++ll++ e++lp+i+++ah++ + + + +
Carubv10026052m 20 VLAVDDNPTCLRKLEELLLRCKY-HVTKTMESKKALEMLRENSnmFDLVISDVEMPDADGFKLLET--GLEMDLPVIMLSAHSDYDSVMKGILH 110
799********************.***************999999*******************97..55567********************* PP
TESEEEESS--HHHHHH CS
Response_reg 93 GakdflsKpfdpeelvk 109
Ga d+l+Kp++ +el +
Carubv10026052m 111 GACDYLVKPVALKELQN 127
***********999975 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0000160 | Biological Process | phosphorelay signal transduction system |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009736 | Biological Process | cytokinin-activated signaling pathway |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 656 aa
Download sequence Send
to blast |
MEFKSAEEGR IEKFPVGMRV LAVDDNPTCL RKLEELLLRC KYHVTKTMES KKALEMLREN 60
SNMFDLVISD VEMPDADGFK LLETGLEMDL PVIMLSAHSD YDSVMKGILH GACDYLVKPV 120
ALKELQNIWH HVVKKNIKSY AKNIGTSRQL LPPSQSDLVP GVSKKRKDKV NDSGDDDDSD 180
REEDDGEGSE QDGDESGTRK KPRVVWSQEL HQKFVNAVQQ LGLDKAVPKK ILDLMNIEGL 240
TRENVASHLQ KYRLYLKKID EGQQQNMTPD AFGTRDSSYF QMAQLDGLRD FTATRQLPSS 300
GLLSRSHLTK IQPHLYSSIN LQGMNSSGFI QQGHHQSSSN SANPFGTYHS TLPPRIQNVN 360
LFQRTSSPLE SLQFPRSKCS AYMGDFKSIG DRPIGGGFVD SCMSYGSSST SLPSASTNTL 420
MLQGNYTQPL HTVSSVNQPC IEKTLSNAAS PNISVQGLSR LPSQSWQGNL NTTRFLSNSS 480
PLNHAFFPDQ VTCAGNNLGD CSSLVSAGNP GGGMQCEPQL LGGFLQNINS LDGQKWEQQN 540
CSMVNNTFGN VEYPLPGDNM VFRENNAARS KGVDESLMSP IENSGNVNSQ EYVGKPSTMV 600
SAEMMKSGKP ENAHIDNQNQ HDVFDDIMNE MMKQEENNGM VSVAARFGFD SFPPP*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB024029 | 0.0 | AB024029.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21L19. |
| GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
