PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026052m
Common NameCARUB_v10026052mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ARR-B
Protein Properties Length: 656aa    MW: 72406.2 Da    PI: 5.7429
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026052mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.51.6e-29201254155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr++W++eLH++Fv+av+qL G +kA+Pk+il+lm+++gLt+e+v+SHLQkYRl
  Carubv10026052m 201 KPRVVWSQELHQKFVNAVQQL-GLDKAVPKKILDLMNIEGLTRENVASHLQKYRL 254
                      79*******************.********************************8 PP
2Response_reg68.33.3e-23201271109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl vdD+p+ ++ l+++l + +y +v+ + ++++ale+l+e+   +Dl++ D+emp+ dG++ll++    e++lp+i+++ah++ + + + +  
  Carubv10026052m  20 VLAVDDNPTCLRKLEELLLRCKY-HVTKTMESKKALEMLRENSnmFDLVISDVEMPDADGFKLLET--GLEMDLPVIMLSAHSDYDSVMKGILH 110
                      799********************.***************999999*******************97..55567********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l+Kp++ +el +
  Carubv10026052m 111 GACDYLVKPVALKELQN 127
                      ***********999975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.2E-1721654IPR017053Response regulator B-type, plant
SuperFamilySSF521722.42E-3017135IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23007.2E-3417152No hitNo description
SMARTSM004485.2E-2618129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011037.77219133IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.4E-2120127IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.06E-1942132No hitNo description
PROSITE profilePS5129411.954198257IPR017930Myb domain
SuperFamilySSF466892.06E-20198258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-30199259IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-26201254IPR006447Myb domain, plants
PfamPF002493.5E-9203253IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MEFKSAEEGR IEKFPVGMRV LAVDDNPTCL RKLEELLLRC KYHVTKTMES KKALEMLREN  60
SNMFDLVISD VEMPDADGFK LLETGLEMDL PVIMLSAHSD YDSVMKGILH GACDYLVKPV  120
ALKELQNIWH HVVKKNIKSY AKNIGTSRQL LPPSQSDLVP GVSKKRKDKV NDSGDDDDSD  180
REEDDGEGSE QDGDESGTRK KPRVVWSQEL HQKFVNAVQQ LGLDKAVPKK ILDLMNIEGL  240
TRENVASHLQ KYRLYLKKID EGQQQNMTPD AFGTRDSSYF QMAQLDGLRD FTATRQLPSS  300
GLLSRSHLTK IQPHLYSSIN LQGMNSSGFI QQGHHQSSSN SANPFGTYHS TLPPRIQNVN  360
LFQRTSSPLE SLQFPRSKCS AYMGDFKSIG DRPIGGGFVD SCMSYGSSST SLPSASTNTL  420
MLQGNYTQPL HTVSSVNQPC IEKTLSNAAS PNISVQGLSR LPSQSWQGNL NTTRFLSNSS  480
PLNHAFFPDQ VTCAGNNLGD CSSLVSAGNP GGGMQCEPQL LGGFLQNINS LDGQKWEQQN  540
CSMVNNTFGN VEYPLPGDNM VFRENNAARS KGVDESLMSP IENSGNVNSQ EYVGKPSTMV  600
SAEMMKSGKP ENAHIDNQNQ HDVFDDIMNE MMKQEENNGM VSVAARFGFD SFPPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-24199259363ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00057PBMTransfer from AT5G58080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026052m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240290.0AB024029.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21L19.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280154.10.0two-component response regulator ARR18 isoform X1
SwissprotQ9FGT70.0ARR18_ARATH; Two-component response regulator ARR18
TrEMBLR0EV990.0R0EV99_9BRAS; Two-component response regulator
STRINGXP_006280154.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142821823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.10.0response regulator 18