PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10025744m
Common NameCARUB_v10025744mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 1361aa    MW: 154480 Da    PI: 6.2182
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10025744mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.62e-2612061262459
                       SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY    4 gynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59  
                       ++ WrKYGqK++k s +prsYYrC+s+ gC+++k+ver ++dp+++ itY +eHnh+
  Carubv10025744m 1206 QWGWRKYGQKPIKASVYPRSYYRCSSSkGCSARKQVERYQTDPNMLLITYFSEHNHP 1262
                       689**********************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002550.00655136IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF522003.53E-8694IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015826.4E-514134IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525402.08E-50127390IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009311.5E-28156400IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3001.3E-10163281IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003648.3E-24165180No hitNo description
PRINTSPR003648.3E-24237251No hitNo description
PRINTSPR003648.3E-24330344No hitNo description
SuperFamilySSF467852.42E-11367451IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:3.40.50.3005.6E-4430476IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF520586.63E-29502818IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.7E-26506812IPR032675Leucine-rich repeat domain, L domain-like
PfamPF077257.9E-10570589IPR011713Leucine-rich repeat 3
PRINTSPR003648.3E-24744760No hitNo description
PROSITE profilePS5081128.18511981264IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.3E-2612051264IPR003657WRKY domain
SuperFamilySSF1182905.75E-2312051264IPR003657WRKY domain
PfamPF031062.2E-2212071262IPR003657WRKY domain
SMARTSM007745.1E-2812071263IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0005774Cellular Componentvacuolar membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1361 aa     Download sequence    Send to blast
MADSEKSVYI SCVEEVRYSF VSHLSEALRR KGIHDVFVDT NDLLSEESQF KVEGARVSVM  60
ILPSNLTVCL DKLVKVLECQ KNRDQVVVPV LYGTRSLETE WLRALDSKGL TSVHQSRKEW  120
SDSQLVKEIV RDVYEKLFCM ERIGIYSKLL EIEKMVCKQP LGIRCVGIWG MPGIGKTTLA  180
RAVFDQMSGE FDAYCFIEDY TKAIQEKGLY RLLEEQFLKE KPGATGTITK LSLLRDKLNN  240
KRVLVVLDDV RNPLVVESFL GGFDWFGPKS LIIITSRDRQ VFRLCRVDQI YEVQGLNEKE  300
ALQLFSLCAS IDDMAEQNLH EVSMKVVKYA DGLPLALNTY GNELKGKKIP PEMETSFLEL  360
KERPPTKFVD AIKSCYDTLN DMEKNIFLDI ACFFQGENVN YVMQLLDGCG FFPHVGIDVL  420
VEKCLVTISE NRVRMHILTQ DVGREIINRE TRHTKKRIRL WEPWCIKFLL ENHEQKNNGE  480
HEKTFKRAQG TEEIEGMFLD TSNLSFDIKP AAFDNMSKLR LLKIYSSNSE VHNVINVLKE  540
SLYSLPNELR LLHWENYPLQ ILPQNFDPMH LVEINMPYSQ LKKLWEGTKP LDMLRTIRLC  600
HSQQLVDIDD LLLAQNLEVI DLQGCTRLQS FPAIGHFLHL RVVNLSGCIE IKSFPEIPPN  660
IESLHLQRTG IVELPLSIVK PNYREILTIL GEIPGLSGVS NLEESDLKPL TSLMKISTSN  720
QNLGKLFCLE LKDCSRLRSL PNMDNLELLK VLDLSGCSEL EIIQAFPRNL KELYLAGTAV  780
RQVPQLPQTL EVFNANGCVS LKSIRLNFEK LPVHYLFSDC FDLSPQVVND FLEKALANAE  840
HIPRECQQEL NEALAFSFCA PSHADQNSKL DLQLGSSVMI QLNPSWRNIL VGFAMLVEVT  900
FSEDYCDTTG FGISCVCKWK NKEGHSHRIK RDLHCWGLGN TVSKVQKDHM FVFCDVNMRP  960
GTDEENDLNI WADLVAFEFV PVNEKITLIG DSCTVIRCGV RVITAATGST SLENISPVLS  1020
LDPMKVSGYE IFEEEVLRVN YVNLEEMDKF LFLYIACLFN DEDVDLLAPL IDGIDLDVSS  1080
GLKVLAGRSL ISVSSNGEIA MHASLRKMGR KFLHRKYMLP GSSKKNKRMV ENSMSSITTH  1140
SKNLQKRLRG MDKEILHTES KKIERLGDKS MISSRKPERT RRMAVGTSYL VDPASQSGED  1200
AAGFEQWGWR KYGQKPIKAS VYPRSYYRCS SSKGCSARKQ VERYQTDPNM LLITYFSEHN  1260
HPCPTESNAL AGSIRSSSSS KCSVITTSGS SKVSRNKDES NKLHFPSSHN PLHVAEGVKE  1320
GDMDEGFRNM EIDNDVEATV LPENFFRDTI DPNLFNEIFD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4c6t_A4e-4121443151PROBABLE WRKY TRANSCRIPTION FACTOR 52
4c6t_C4e-4121443151PROBABLE WRKY TRANSCRIPTION FACTOR 52
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Acts also as a disease resistance protein that specifically recognizes the AvrRps4 type III effector avirulence protein from P.syringae. Heterodimerization with RPS4B is required to form a functional complex to recognize AvrRps4 and to mediate the hypersensitive response (PubMed:25744164). {ECO:0000250|UniProtKB:P0DKH5, ECO:0000269|PubMed:25744164}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10025744m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006279896.10.0probable WRKY transcription factor 16
SwissprotQ9FL920.0RRS1B_ARATH; Disease resistance protein RRS1B
TrEMBLR0G8C30.0R0G8C3_9BRAS; Uncharacterized protein
STRINGXP_006279896.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2506814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45050.10.0Disease resistance protein (TIR-NBS-LRR class)