PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10024894m
Common NameCARUB_v10024894mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 371aa    MW: 41681.2 Da    PI: 8.3283
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10024894mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.92e-07254301448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT +E  +lvd++  +G g W+ I + +     +Rt+ +++++w+++l
  Carubv10024894m 254 WTVDEVMKLVDGISHFGVGKWTDIKNLFFhsaAHRTPIDIRDKWRNLL 301
                      **********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.649246305IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-12246307IPR009057Homeodomain-like
SuperFamilySSF466896.58E-16248303IPR009057Homeodomain-like
SMARTSM007172.4E-7250303IPR001005SANT/Myb domain
CDDcd116601.18E-19252302No hitNo description
PfamPF139218.7E-7254307No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MEPKHDNTAV DSFLGLGMEN MGLSSTMDEF SHGFDFSFLP DYGGLNSCST QDVGAGLKFE  60
ILDGFLDEVE EVEDIYASHD LSSIGNHIFP ETEVKKNVSE LDGDPYGLKN NRSSNSPGIS  120
GSISESSKET APHAESPNQN ASNERVKDSL DSNESEDDNK PLSTFIGSWV KRGKNRKKNL  180
SNTAYSRINS SGERMSCVSY GFRPRKGPMK KYMHTSTENT FSDDQLTSSE KEDDISVTKT  240
SRTRSDRRKH QRMWTVDEVM KLVDGISHFG VGKWTDIKNL FFHSAAHRTP IDIRDKWRNL  300
LKASYKDMHN DGQADERRKS VACSIPKDVL HRVKELASLH PYPFSKSSCF IHDSSRSRSS  360
AKKKKKKRRS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1362368KKKKKRR
2363368KKKKRR
3364368KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10024894m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295772.10.0uncharacterized protein LOC17889687
RefseqXP_023639795.10.0uncharacterized protein LOC17889687
RefseqXP_023639796.10.0uncharacterized protein LOC17889687
RefseqXP_023639797.10.0uncharacterized protein LOC17889687
RefseqXP_023639798.10.0uncharacterized protein LOC17889687
TrEMBLR0HTE80.0R0HTE8_9BRAS; Uncharacterized protein
STRINGXP_006295772.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92001927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.14e-20TRF-like 3