PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10024747m
Common NameCARUB_v10024747mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 221aa    MW: 25095.3 Da    PI: 6.6809
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10024747mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.44.9e-11127171549
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 
                      ++ +r+++NRe+A+rsR RK+  ie+L++++  L  eN++L ++l
  Carubv10024747m 127 RKRKRMESNRESAKRSRMRKQRHIENLKDEANRLGLENRDLGNRL 171
                      67899**********************************998665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.8E-13123187IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.071125171IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.0E-9127171No hitNo description
SuperFamilySSF579591.13E-9127174No hitNo description
PfamPF001703.9E-9127171IPR004827Basic-leucine zipper domain
CDDcd147021.23E-15128175No hitNo description
PROSITE patternPS000360130145IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MLSTVPAFSF TEPGLVNQLS DFQTGFTPWE FDCSALFFSS IHHEPAVPSP CSGESETGSV  60
KIDTGFDESC IGSIRMNSGS DGSDIFHGVL SPKSDELDSE NMKNRINATD HNRAELNRPV  120
LQVTDERKRK RMESNRESAK RSRMRKQRHI ENLKDEANRL GLENRDLGNR LRIVLYNLGL  180
ISTDNDRLMS EQEILTRRFL EMRQILILKQ LQQNPSLIIK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139144KRSRMR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10024747m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295633.11e-162transcriptional activator TAF-1
TrEMBLR0G0A21e-160R0G0A2_9BRAS; Uncharacterized protein
STRINGXP_006295633.11e-161(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78551840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22850.21e-128basic leucine-zipper 6