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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Carubv10023994m |
| Common Name | CARUB_v10023994mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 230aa MW: 25146.7 Da PI: 10.4981 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Carubv10023994m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 268.3 | 4e-82 | 30 | 229 | 96 | 301 |
GAGA_bind 96 pvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderska 189
+++ ++++t+ +d +q +q ++ + ++ l+++ +++ ++ ++ +++k+++q+ +k++++k+ +kk+ ++s k++k++s +++k+
Carubv10023994m 30 FHSYIAVPNTTGVDLSQV---SQASPVESMMVPQSRLSHPITVDYRNGVESVEQKSTNQSLSKALKPKTPRKKR--ATSDKSKKTPSI-PETKR 117
345788999999998888...44444444455677777777777888888888888888888888887777777..556667778886.699** PP
GAGA_bind 190 ekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpv 283
ekk++d++++ s+D+s +P+PvCsCtG++r+CYkWG+GGWqS+CCt++iS+yPLP+st+r+gaR+agrKmS+ga+ klL +La+eGy+ls+pv
Carubv10023994m 118 EKKNLDINIDISSFDTSEVPPPVCSCTGVSRVCYKWGMGGWQSSCCTISISTYPLPMSTTRPGARLAGRKMSNGAYVKLLVRLAGEGYNLSHPV 211
********************************************************************************************** PP
GAGA_bind 284 DLkdhWAkHGtnkfvtir 301
DLk+hWA+HGtnkfvti+
Carubv10023994m 212 DLKNHWARHGTNKFVTIK 229
*****************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 230 aa
Download sequence Send
to blast |
MNSFPSQNLM LSASKANKDA GLRTSNANWF HSYIAVPNTT GVDLSQVSQA SPVESMMVPQ 60
SRLSHPITVD YRNGVESVEQ KSTNQSLSKA LKPKTPRKKR ATSDKSKKTP SIPETKREKK 120
NLDINIDISS FDTSEVPPPV CSCTGVSRVC YKWGMGGWQS SCCTISISTY PLPMSTTRPG 180
ARLAGRKMSN GAYVKLLVRL AGEGYNLSHP VDLKNHWARH GTNKFVTIK*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU089961 | 0.0 | EU089961.1 Arabidopsis arenosa GAGA-binding transcriptional activator (BBR/BPC7) gene, partial cds. |
