PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10023744m | ||||||||
Common Name | CARUB_v10023744mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 298aa MW: 33896.2 Da PI: 8.0184 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.5 | 1e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+d++++ G+g +W + +++ g++R++k+c++rw++yl Carubv10023744m 14 RGPWSPEEDAKLKDYIEKQGTGgNWIALPHKAGLRRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 42.9 | 1.2e-13 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd +++ +++ G++ W+ Ia+++ gRt++++k++w++ Carubv10023744m 69 GDFTEEEDNIIYSLFASIGSR-WSVIAAHLH-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.148 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.79E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.46E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.006 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 3.3E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-13 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-24 | 70 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.07E-9 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009785 | Biological Process | blue light signaling pathway | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN 60 YLRPNIRHGD FTEEEDNIIY SLFASIGSRW SVIAAHLHGR TDNDIKNYWN TKLKKKLIAT 120 MAPPPHHHLA IGTSISPPPS SSSHYNMINS LHPYNPSIST NQPLTPHQGM MMTMMGQQQQ 180 LLYQEDMGSL VNSPNRNKLI MSHQEDSHEQ STNKGIMLLS DVRSGSSKTS TVTRVKMEHR 240 DHHHHHHEED ERSMSSVVIE DYGMEEIKQL IGSSCTSSSN SLWFDENKTE DKFMLYY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-24 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10023744m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519577 | 0.0 | AY519577.1 Arabidopsis thaliana MYB transcription factor (At2g36890) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006294706.1 | 0.0 | transcription factor RAX2 | ||||
Swissprot | Q9SJL7 | 1e-158 | RAX2_ARATH; Transcription factor RAX2 | ||||
TrEMBL | R0HDJ3 | 0.0 | R0HDJ3_9BRAS; Uncharacterized protein | ||||
STRING | XP_006294706.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 1e-157 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10023744m |
Entrez Gene | 17887811 |
Publications ? help Back to Top | |||
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