PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023734m
Common NameCARUB_v10023506mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 300aa    MW: 34383.9 Da    PI: 9.0091
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023734mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.54.8e-13120170154
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +r++h ++Er+RR+++N  ++ Lr+++P++   + ++ + a+i+  A++++k L
  Carubv10023734m 120 QRMTHIAVERNRRRQMNVHLNSLRSIIPSS---YIQRGDQASIVGGAIDFVKIL 170
                      79****************************...9***************99866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.67E-10118175No hitNo description
PROSITE profilePS5088814.557119170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-15119185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-13120183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-10120170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-9125176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MLQQSEEPSS FLSIKEPNFL ALLSLQTLGK PNWELENYLP HEVPEFHSPI NSETNHYYQN  60
TYLEGVSEAI SGQELPFNPL QNANSRRKRK NNNLVTLMNK EKRKRRRTKP AKNIEEMESQ  120
RMTHIAVERN RRRQMNVHLN SLRSIIPSSY IQRGDQASIV GGAIDFVKIL EQRLQSLEAQ  180
KTTQQSSDSK EQIPEDNNLR DISSNKLRGS KEEEESSRLK IDATVIESHV NLKIQCTRKQ  240
GQLLRSIIML EKFGFTVLHL NITSPTNTSV SYSFNLKMED DCKLGSADEI TAAIRQIFE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
187106KRKNNNLVTLMNKEKRKRRR
2101106KRKRRR
3102106RKRRR
4102107RKRRRT
5102109RKRRRTKP
6120131RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023734m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6784340.0AB678434.1 Arabidopsis thaliana mRNA for basic helix-loop-helix DNA-binding superfamily protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293490.10.0transcription factor bHLH70 isoform X2
SwissprotO810371e-179BH070_ARATH; Transcription factor bHLH70
TrEMBLR0FU140.0R0FU14_9BRAS; Uncharacterized protein
TrEMBLR0HQY40.0R0HQY4_9BRAS; Uncharacterized protein
STRINGXP_006293490.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-174bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]