PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10023730m | ||||||||
Common Name | CARUB_v10023730mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 301aa MW: 34565 Da PI: 8.2126 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.1 | 4.1e-50 | 43 | 166 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 pGfrFhPtdeel+ +yL++kve+k+++l e ik++diyk++PwdLp+ + +ekewyfF+ r +ky+++ r+nr+t sg+Wkatg dk+v+s + Carubv10023730m 43 PGFRFHPTDEELLGYYLRRKVENKPIKL-ELIKQIDIYKFDPWDLPRVSSVGEKEWYFFCMRGRKYRNSVRPNRVTGSGFWKATGIDKPVYS-N 134 9***************************.99***************7777799***************************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 vglkk+Lv+y g+a kg+ktdW+mhe+rl Carubv10023730m 135 LDCVGLKKSLVYYLGSAGKGTKTDWMMHEFRL 166 999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 53.535 | 41 | 190 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.01E-56 | 42 | 189 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-25 | 43 | 166 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005992 | Biological Process | trehalose biosynthetic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006561 | Biological Process | proline biosynthetic process | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010120 | Biological Process | camalexin biosynthetic process | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MHYGTFYVER LDWYLREIDV VKMSGEGKLG RDHHEEEGDA PLPGFRFHPT DEELLGYYLR 60 RKVENKPIKL ELIKQIDIYK FDPWDLPRVS SVGEKEWYFF CMRGRKYRNS VRPNRVTGSG 120 FWKATGIDKP VYSNLDCVGL KKSLVYYLGS AGKGTKTDWM MHEFRLPSTS KTDSPALQAE 180 VWTLCRIFKR VTSHRNPTIV PPNRKPVITL TDSCSKTSSL DSDHTSHRVV DSLPLSHEPP 240 LQPHTPYWNQ HAVGFNQPTY TCNDNNNFLS FWNVNGTGDF IGDSASWDEL RSVIDGNTKP 300 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-53 | 43 | 196 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-53 | 43 | 196 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-53 | 43 | 196 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-53 | 43 | 196 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-53 | 43 | 196 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-53 | 43 | 196 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-53 | 43 | 196 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-53 | 43 | 196 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-53 | 43 | 196 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-53 | 43 | 196 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-53 | 43 | 196 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-53 | 43 | 196 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-53 | 43 | 196 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-53 | 43 | 196 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00310 | DAP | Transfer from AT2G43000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10023730m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493587 | 0.0 | AB493587.1 Arabidopsis thaliana At2g43000 mRNA for hypothetical protein, partial cds, clone: RAAt2g43000. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006294694.2 | 0.0 | transcription factor JUNGBRUNNEN 1 | ||||
Swissprot | Q9SK55 | 0.0 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | R0FX78 | 0.0 | R0FX78_9BRAS; Uncharacterized protein | ||||
STRING | XP_006294694.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 0.0 | NAC domain containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10023730m |
Entrez Gene | 17889240 |