PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023707m
Common NameCARUB_v10023707mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 306aa    MW: 34566.1 Da    PI: 9.4684
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023707mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.61.9e-12117163354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r+h  +E+rRRdriNs +  Lr+l+P++      Kl+Ka+ L  ++e +k+L
  Carubv10023707m 117 RSHRLAEKRRRDRINSHLTALRKLVPNS-----DKLDKAALLATVIEQVKEL 163
                      68*************************8.....7*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-14113169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.231114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.42E-12117166No hitNo description
Gene3DG3DSA:4.10.280.106.0E-14117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-10117163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-12120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.41E-4199273No hitNo description
Gene3DG3DSA:3.30.70.2601.4E-4205269No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
CNTQKLRPLS ISLTSTYIEK TSFNSQFQIL QPKKINKERK REVYNFHFKN TTKSFFICFL  60
VAMENSYDST TPYMVSWSLQ SDSDWNRFNL GFSSSSSGNF PADDCVGGIE KAESLSRSHR  120
LAEKRRRDRI NSHLTALRKL VPNSDKLDKA ALLATVIEQV KELKQQAAES PIFQDLPTEA  180
DEVTVQPETI SDFESNTNTL IFRASFCCQD QPEVISEIIK VLTKLQLETI QAEIISVGGR  240
MRINFILRDN NCNKTTNVAS SAKALKQSLC AALNRITSSS SSSTSSVCRI RSKRQRWFLS  300
SHYSQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023707m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545950.0AC254595.1 Capsella rubella clone CAP16-M18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294672.21e-179transcription factor bHLH51
SwissprotQ9XEF01e-157BH051_ARATH; Transcription factor bHLH51
TrEMBLR0HQK60.0R0HQK6_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006294672.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68062542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-155bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]