PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

HD-ZIP

Protein Properties

Length: 310aa MW: 34327.1 Da PI: 9.6468

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10023690m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.6	4.2e-18	144	198	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq +Le+ F+ +++++ ++++ LA++l+L rqV vWFqNrRa+ k Carubv10023690m 144 RKKLRLTKEQSSRLEDSFKHHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTK 198 788899***********************************************98 PP
2	HD-ZIP_I/II	122.6	1.9e-39	144	232	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+keq++ LE+sF+++++L+p++K+ lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++l++en rL+ke +eL+ + Carubv10023690m 144 RKKLRLTKEQSSRLEDSFKHHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEILKKCCETLTDENMRLRKEIQELK-T 232 69*************************************************************************************9.3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.086	140	200	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.4E-17	141	203	IPR009057	Homeodomain-like
SMART	SM00389	1.3E-15	142	204	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-18	142	208	IPR009057	Homeodomain-like
CDD	cd00086	4.33E-16	144	201	No hit	No description
Pfam	PF00046	1.4E-15	144	198	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	175	198	IPR017970	Homeobox, conserved site
SMART	SM00340	7.0E-21	200	246	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	3.8E-10	200	232	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
SNPKPKKKSH FFFPLKIPKI DKIYIGKIFF IILTQMSYDD SCNSGLVLGL GLSPTPNNYN 60 NAIKRSSEYK LEPSLTLSLS GDPLLTLVAG ADQLCRQTSS LSGVSSFSSG RVVKRERYGG 120 EESPEEEETT KRVISEDEEG VSARKKLRLT KEQSSRLEDS FKHHSTLNPK QKQVLARQLN 180 LRPRQVEVWF QNRRARTKLK QTEVDCEILK KCCETLTDEN MRLRKEIQEL KTLSLTNHHQ 240 PFYMHMSTNP TLTICPSCEI IIAGGGNGGG GGGSVANTVV VDGGKTKGAF SISSKPHFFN 300 PYTNPSAAC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	5	9	KKKSH
2	192	200	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10023690m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006294654.2	0.0	homeobox-leucine zipper protein HAT9
Swissprot	P46603	1e-131	HAT9_ARATH; Homeobox-leucine zipper protein HAT9
TrEMBL	R0FX48	0.0	R0FX48_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_006294654.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1671	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22800.1	1e-128	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Carubv10023690m
Entrez Gene	17887767

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]