PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023683m
Common NameCARUB_v10023683mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 312aa    MW: 33627.8 Da    PI: 7.7263
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023683mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11245290655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri  ++ +L+el+P+     +k  s a++L +Ave+Ik Lq
  Carubv10023683m 245 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVEHIKGLQ 290
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.075239289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.15E-14242303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.30E-11243294No hitNo description
Gene3DG3DSA:4.10.280.103.0E-13244301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-13245295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-9245290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MYPPNSSKST APDGGDADNN QYDSAAGATR DFSSFGSQTH HPPRQQQQHD PNVVGHYISG  60
EPSSVGFDSG ASSSSLFRHR SSPAGFYDQH FPTDPNGFSL GRPNGGYGGG GQGGGGGGGE  120
RGPSRLKSEL RYSGGSSSHQ EHSSLPRISE VEATAAAING VASSSMSFGN DHSNNWDNSS  180
SHISFTIDQP GKRSKNSDFF TLETQFSMPQ TSLEMARMEN LMNIPEDSVP CRVRAKRGFA  240
THPRSIAERE RRTRISGKLK KLQELVPNMD KQTSYADMLD LAVEHIKGLQ HQVESLEKGM  300
ERCTCGACKK R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023683m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0044503e-92AC004450.3 Arabidopsis thaliana chromosome 2 clone F14B2 map CIC10F02, complete sequence.
GenBankCP0026853e-92CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294646.10.0transcription factor bHLH129
SwissprotQ9ZW811e-154BH129_ARATH; Transcription factor bHLH129
TrEMBLR0HDD90.0R0HDD9_9BRAS; Uncharacterized protein
STRINGXP_006294646.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103291833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43140.21e-140bHLH family protein