PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10023675m

Common Name

CARUB_v10023675mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Trihelix

Protein Properties

Length: 315aa MW: 34714 Da PI: 5.9387

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10023675m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94	1.5e-29	40	133	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rWt+qe+l+Li+++r e+r+rrg+ +++p+W++vs+++r++g++r+p+qC+++w+nl+++ykkike+e++ ++e++s +++ +++ Carubv10023675m 40 RWTRQEILVLIQGKRVAENRVRRGRaagmalgsgQMEPKWASVSSYCRRHGVNRGPVQCRKRWSNLAGDYKKIKEWESQVKEETESYWVMRNDV 133 8********************97778888888****************************************************999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.1E-13	40	130	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.4E-5	40	105	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.4	40	106	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0050777	Biological Process	negative regulation of immune response
GO:0071219	Biological Process	cellular response to molecule of bacterial origin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MALEQLGLGV SAVDGGGGEN SSAPSNDGGD DGVKTARLPR WTRQEILVLI QGKRVAENRV 60 RRGRAAGMAL GSGQMEPKWA SVSSYCRRHG VNRGPVQCRK RWSNLAGDYK KIKEWESQVK 120 EETESYWVMR NDVRREKKLP GFFDKEVYDI VDGAVIPPAV PTLALGLAPA SEEGLLPDLD 180 RPNELNSTPV PISVSDVVDK EKQEACKADQ GRLKEKHPEG ANVEGGSTSQ EERKRKRTST 240 NEKEEEEDGE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL 300 NKLADAVTKI ADKL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00288	DAP	Transfer from AT2G33550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10023675m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY065364	0.0	AY065364.1 Arabidopsis thaliana unknown protein (At2g33550) mRNA, complete cds.
GenBank	AY096389	0.0	AY096389.1 Arabidopsis thaliana unknown protein (At2g33550) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006294638.1	0.0	trihelix transcription factor ASR3 isoform X1
Swissprot	Q8VZ20	0.0	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	R0FXU4	0.0	R0FXU4_9BRAS; Uncharacterized protein
STRING	XP_006294638.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6557	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	0.0	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Carubv10023675m
Entrez Gene	17890452

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]